Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0080 ATGGCACCTAAACAAGATATAGAGGAAATTTCTTCTGGGAATTCTGTATATTCACCGGCTTCAACCTCACCAATGGGTAGCAGATTCAGACTTGTGTTTGATAGATTATGGGCTTTTGCCTCTTCTTTGAAGAAGAGCAGCACACCACGTGGTCGACGAATTTTCCACAGAGATGTCGAAAAAGAAGAATTCCAGTATGCCAGCACTCAATGCCTCTCATCCTACTACAGTGTGTTCGTGGTTCGCCTGGCAATCATGGCCATGCTAGCCATCTTGATTGGGCTGCTCACTATATTAACATGGCATTTCACCAAGAGTTATACGGCTAAATCACTTGATAACTTAGCATATGGGCTTCGTTACGAATTACTGCAGCGCCCCATCTTACGGATGTGGAATATCTTGAATTCTACTGCTGAAATTACAAAAGCTCAGGTTAAGCTGTCTGAGTATGTGATCAGACGATACAGCAACCCTGCCAATCAAGCAGAACAAGTTGAGCAGCTGTACGAAGCTATGAGGTCTGTAACCTGGGCCCTCTTCTCTAGCAGCAAGGCACTCAATTCAATAACTATCAATTACAGGAACGGCTTTGTTCAGGCATTCCACAGAGATCTTAAGGATAACAATACATTTTACATCTACTCTGATCTTGCAAACTACTCCATAGGTGCCAATGAGATGAAATCACTCTCAACAGATCAAGCTTGGAACGATGAAGCCATTCGTGGTAACAGTTCTGCAACTTGGTATCGTGAACCACTTGACCCTCTTAGTGGTGTGAAGATTGGAAAAGCTAAGAAGATTGCACCAGAAGACTTGATTAATATTGCTGGCATTTATCAAGTCCCTGATGGGGCAGCTTCATGGCATGTTGCTGTGAGCAAGTTTACCGATTCACCATTGCTTTCTGCTGCGCTGCCAGTTTGGGACTCTTCCAATAAGAGCATTGTGGCAGTTGTGGGTGTCACAACCGCACTTTATAGTGTTGGCCAGCTAATGAAAGAACTAGTTGAATTTCATAGTGGTTATATCTATTTGACCTCCCTAGAGGGTTACTTACTTGCCACTTCCACAAATGCTCCACTGCTAACAAATTCAAAGCCTCTCAAGCTTAAGATGGCTGTTGATTGTGAAGATGATGTAATACGTTTGGGAGCCCAGTGGCTAAAGAGAACCTACGGGAAGAATTTTCCTCCAAGTCATGGGGTTCACGTAGAGGATGTCCATCTAGGCCATCAGCAATATTACATTGACTCATTCTTTTTAAATTTGAAGAGGCTTCCTCTGGTGGGTGTTATCATTATTCCAAGAAAGTATATTATGGGGAAGGTTGATCAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCGTTGTGTATTCTAGTCATTGGATGTGTTTGCATTTTAATTCTGACAAATGGGGTATCAAAGGAAATGAAACTAAGAGCTGAACTAATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAGTTTCTTGCAAATATGAGTCATGAATTGAGGACACCTATGGCAGCAGTGATTGGGTTGCTTGACATTCTTATATCTGATGATTGTCTAACAAATGAACAATATGCAACAGTTAGTCAGATAAGAAAATGCTCAACTGCATTACTCCGTCTTCTTAACAACATATTGGACCTCAGCAAGGTGGAATCCGGAAAATTGGTGTTAGAAAATGCAGAATTTGACTTGGGGCGGGAGCTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAACGTAGAGACTGTTTTGAACCTATCAGATGATATGCCGAAGGTAGTTCAAGGTGATTCTGCTAGAGTTGTTCAAATTTTTGCAAACTTGATCAACAATTCAATTAAGTTTACTCCATCTGGTCACATTATTCTTCGAGGATGGTGCGAGAACCCAAATTGTTCCAGTGATAGCCAAAATCTTCCTCTTAATCAGAAGTCCCGGGCTCCACAAAAGACCAGAATGAAGAAACAAGAAAACCATGCAAAGAAGGCACCTAAAAAAGACAACAAAATAATTCTTTGGTTTGAAGTAGATGACACAGGCTGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCATCAACCACTAGATTGCATGGAGGCACCGGTCTTGGACTTTGCATTGTGAGAACCTTGGTCAATAAGATGGGTGGAGAAATCAAGGTTGTTAAAAAGGAAGGCCCAGGAACCCTGATGCGATTGTACCTGCTTCTCAGTACACCCATGGATGCCACAGAACAACATTGTCACATAGATTATGAAGAGCATGGCTTAGTGGTATTGCTTGCACTGCATGGAGACACGGGTCGATCTATCACATCTAACTGGTTACAGAAAAATGGGGCTTGCACTCTCGAGGCATCTGAATGGAATGAACTGACGCAAATTCTGAGGGAACTCTTCCATGCAAGTTCAGTCCACCATAATGGCTTTGATGCACATTATGCAGTAAGCAAGAGTTGGAAGTCCAAATTACTCAACATAGAAGAGATGAGGAACCCAACATTTGTGATTATAGTGGACATAGGGCTGCTTGATTTGAGCACAGATATATGGAACGAACAGCTCAACTTCCTTCACAAGTACTTTGGGAGAGCAAAGTTCGCATGGGTGCTAAATCATGACACCTCTAATACCATAAAGATGGAGCTTCGCAGGAAGGGGCATATATTGATGATCAACAAGCCCCTCTACAAGACCAAAATGTTTCATATTCTGGAAGCTGTCATAAGGGAGAGAAATCTTGAGCTGCAAAAGAAAAACATGATTGCTTCAAGAACCACGACGAAAGAGGGCGATGCGCATGAGTTTCTGGAGATTGATTCTACTCATTTTGATGGTGCTAGCTCTGATGGTTCTGACATATCTGAAATGGGTGCTTCTAATGGTTCCAATGGAGAAAAACGAAGGGGAAAAATTGTAAAATCCCATCTACCACCATCACAATACAACAAAAACAACTGCCTAGTTGGATTAACAGATGAATCCGCAGAAGATAACATTTCAAGGAAAGAAGAATCATGTCAGAGTAGCCACAACTGCCGGCACAGCCTTGAAGAGACGGAACCAAAATTACAAGCATCCTTTCCAACAGAAGCTCAAGGAAAAGATTCTGGTTCTAGGAAAACATTTAGTGTCACTTGCTCAAGTAAAACTGTTAATGGAAAGAAATCTCTTGACGGTCTGAGGATATTGCTTGCAGAAGACAATCCAGTACTTCAAAGAGTCGCAACCATAATGTTGGAGAAAATGGGAGCTACAGTAGTTGCAGTCGGAGATGGACAGCAGGCTGTGGATGCTCTGAATTGCATGCTCGGCACTGAAGATAGTAGAAAGGAGTCTCTAATGAAGGAGAGAAGCACAATATCTCAAATAGAAATTATCAGCTGCACACCTTATGACTTGATCCTGATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCGACGAAAGCAATCAGGAAATCGGAAGCAGGAACAGGCTCGCACATTCCCATAGTTGCTCTTACGGCCCACGCAATGTCATGTGATGAGGCTAAGTGCCTGGAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCTCATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCCTGA 3723 0.4225 MAPKQDIEEISSGNSVYSPASTSPMGSRFRLVFDRLWAFASSLKKSSTPRGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTILTWHFTKSYTAKSLDNLAYGLRYELLQRPILRMWNILNSTAEITKAQVKLSEYVIRRYSNPANQAEQVEQLYEAMRSVTWALFSSSKALNSITINYRNGFVQAFHRDLKDNNTFYIYSDLANYSIGANEMKSLSTDQAWNDEAIRGNSSATWYREPLDPLSGVKIGKAKKIAPEDLINIAGIYQVPDGAASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEFHSGYIYLTSLEGYLLATSTNAPLLTNSKPLKLKMAVDCEDDVIRLGAQWLKRTYGKNFPPSHGVHVEDVHLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGKVDQRAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYATVSQIRKCSTALLRLLNNILDLSKVESGKLVLENAEFDLGRELEGLVDMFSVQCINHNVETVLNLSDDMPKVVQGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPNCSSDSQNLPLNQKSRAPQKTRMKKQENHAKKAPKKDNKIILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLYLLLSTPMDATEQHCHIDYEEHGLVVLLALHGDTGRSITSNWLQKNGACTLEASEWNELTQILRELFHASSVHHNGFDAHYAVSKSWKSKLLNIEEMRNPTFVIIVDIGLLDLSTDIWNEQLNFLHKYFGRAKFAWVLNHDTSNTIKMELRRKGHILMINKPLYKTKMFHILEAVIRERNLELQKKNMIASRTTTKEGDAHEFLEIDSTHFDGASSDGSDISEMGASNGSNGEKRRGKIVKSHLPPSQYNKNNCLVGLTDESAEDNISRKEESCQSSHNCRHSLEETEPKLQASFPTEAQGKDSGSRKTFSVTCSSKTVNGKKSLDGLRILLAEDNPVLQRVATIMLEKMGATVVAVGDGQQAVDALNCMLGTEDSRKESLMKERSTISQIEIISCTPYDLILMDCQMPKMDGYEATKAIRKSEAGTGSHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMVSTILSLTKTTS 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0080 1240 Pfam Response regulator receiver domain 1092 1231 IPR001789 GO:0000160
Lele52g0080 1240 MobiDBLite consensus disorder prediction 974 991 - -
Lele52g0080 1240 MobiDBLite consensus disorder prediction 972 998 - -
Lele52g0080 1240 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 617 766 IPR003594 -
Lele52g0080 1240 SMART HisKA_10 504 570 IPR003661 GO:0000155|GO:0007165
Lele52g0080 1240 SMART REC_2 1090 1232 IPR001789 GO:0000160
Lele52g0080 1240 Gene3D - 492 571 - -
Lele52g0080 1240 MobiDBLite consensus disorder prediction 1029 1073 - -
Lele52g0080 1240 PANTHER TWO-COMPONENT HISTIDINE KINASE 64 773 - -
Lele52g0080 1240 MobiDBLite consensus disorder prediction 671 685 - -
Lele52g0080 1240 Gene3D - 1071 1238 - -
Lele52g0080 1240 SUPERFAMILY CheY-like 1088 1236 IPR011006 -
Lele52g0080 1240 CDD REC_hyHK_CKI1_RcsC-like 1092 1232 - -
Lele52g0080 1240 Pfam His Kinase A (phospho-acceptor) domain 505 570 IPR003661 GO:0000155|GO:0007165
Lele52g0080 1240 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 491 571 IPR036097 GO:0000155|GO:0007165
Lele52g0080 1240 MobiDBLite consensus disorder prediction 8 22 - -
Lele52g0080 1240 ProSiteProfiles Response regulatory domain profile. 1091 1236 IPR001789 GO:0000160
Lele52g0080 1240 MobiDBLite consensus disorder prediction 1 22 - -
Lele52g0080 1240 Gene3D - 572 769 IPR036890 -
Lele52g0080 1240 FunFam Histidine kinase 1-like protein 492 571 - -
Lele52g0080 1240 MobiDBLite consensus disorder prediction 1055 1073 - -
Lele52g0080 1240 ProSiteProfiles Histidine kinase domain profile. 511 768 IPR005467 -
Lele52g0080 1240 SMART HKATPase_4 617 768 IPR003594 -
Lele52g0080 1240 CDD HisKA 505 566 IPR003661 GO:0000155|GO:0007165
Lele52g0080 1240 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 559 764 IPR036890 -
Lele52g0080 1240 PRINTS Bacterial sensor protein C-terminal signature 728 746 IPR004358 GO:0016310|GO:0016772
Lele52g0080 1240 PRINTS Bacterial sensor protein C-terminal signature 693 707 IPR004358 GO:0016310|GO:0016772
Lele52g0080 1240 PRINTS Bacterial sensor protein C-terminal signature 711 721 IPR004358 GO:0016310|GO:0016772
Lele52g0080 1240 MobiDBLite consensus disorder prediction 1029 1050 - -
Lele52g0080 1240 MobiDBLite consensus disorder prediction 656 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0080 Lele-ChrLele52 493518 500194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0080 23 1240 Histidine Kinase Gene Family AT2G17820 64.830 0.0 1564
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele52g0080 HATPase_c 4.3e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele54g0546 54 11916723 11920617 Lele52g0080 52 493518 500194 CCT
Lele56g0888 56 7465705 7478449 Lele52g0080 52 493518 500194 CCT
Lele52g0080 52 493518 500194 Lele52g0080 52 493518 500194 ECH
Lele49g0071 49 428648 434652 Lele52g0080 52 493518 500194 hybridization
Lele50g0082 50 514715 527701 Lele52g0080 52 493518 500194 hybridization