Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0058 ATGGATTTTGTGGCGAATCCTTTTCCTGGGCCTTCTTCCTTGCTGGGCTCCTTCGGGAGCTTCGTTGAGAGGGTTAGACGCATGAGCAGCCTCGCGGTTTCTGTTATAATTGGAAACATCTTCTCTGCGATCTTGACATTTTGCTTTGCCTTAGTGGGAACATTATTGGGTGCCATGACGGGAGCTTTGATAGGCCAAGAGACTGAGAGTGGCTTTATTAGAGGAGCAGCAGTTGGTGCCATATCTGGAGCTGTTTTCTCCATTGAAGTATTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATATGGGATTGGGTGTCTCTTATATCTGATTGATGTCATTGCTAGCCTACTGAGTGGGAGACTTGTGCGTGAGAGGATTGGCCCTGCCATGTTAAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAACAAACTTTGAGGAGGTTCAAAATATCTTTGACACTGGTGGTTGCAAGGGTTTAACAGGAGATTATGTTGAAAAGATCCCAAAGATCACAATCACAAATGATAATAATATCGATGCTTGGGGTGAAAGAGTTTCTTGTTCAGTCTGCCTCCAGGACTTTCAGGCTGGAGAGACAGTCAGAAGTTTGCCTTATTGCCATCACATGTTCCACTTACCATGCATAGATAAGTGGCTCTTCAGGCACGGTTCATGTCCGTTATGCAGAAGGGATCTGTAA 708 0.4492 MDFVANPFPGPSSLLGSFGSFVERVRRMSSLAVSVIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDEYGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETNFEEVQNIFDTGGCKGLTGDYVEKIPKITITNDNNIDAWGERVSCSVCLQDFQAGETVRSLPYCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0058 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Lele52g0058 235 CDD RING-H2_PA-TM-RING 190 232 - -
Lele52g0058 235 Pfam Ring finger domain 189 232 IPR001841 -
Lele52g0058 235 SUPERFAMILY RING/U-box 189 235 - -
Lele52g0058 235 SMART ring_2 190 231 IPR001841 -
Lele52g0058 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 235 IPR013083 -
Lele52g0058 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lele52g0058 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 20 234 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0058 Lele-ChrLele52 382878 384414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0058 20 235 C3H Transcription Factor Family AT5G66070 76.389 8.02e-117 331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0050 49 333196 336548 Lele52g0058 52 382878 384414 hybridization
Lele50g0058 50 404352 410937 Lele52g0058 52 382878 384414 hybridization