Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0057 ATGAACGCTGCGTTCATACACCGAACCATCCGCGTTAACTTAACGTCGCCTGGACGTGACCCCATCTCCGAACGACATCCCAACAAGCAGCCATTGGATCGCATTGGACCGTTAATATTTTTAATAGAAGACAATAATAAATCTCGGGAACGTGGCGTCCACGGATCCCACTTCCACAAACGCCGTTTCCTACCATATAGGCATATAACCTCTCTCTCCCACGATATCACCTACTACATTCATTCTCTTTTCCTCCGTCTTTGTCCCTTTCACAGAAGCGGCCCAGTGACAGATCTTCTTCATCGTAGCTGCAGACGCCAGCAGATCACTACTATGGCATCTAGAAATCCTTTTGACAACATATTGAAAACTCTCGAGAAGCCCGAAGGCGGTCATTTCGGCAAGTACTATAGTTTGCCGGCTCTCAACGATCCTAGAATCGATAGGCTTCCTTACTCTATCAGGATACTTCTGGAATCCGCGATTCGTAACTGCGATGAGTTTCAAGTTAAGAGAAATGATATTGAAAAAATTATCGATTGGGAGAATACCTCTCCTAAACTGGTAGAAATTCCTTTCAAGCCTGCGAGAGTGCTTCTGCAGGATTTTACTGGGGTGCCTGCTGTTGTTGATCTTGCTTGCATGCGAGATGCAATGAACAAACTTGGTGGTGATTCTAATAAAATTAATCCCTTGGTTCCAGTTGACCTTGTCATAGATCACTCAGTTCAGGTAGATGTGGCAAGATCAGAAAATGCTGTGCAGGCAAACATGGAACTTGAATTCAAAAGGAACAATGAAAGATTTGGTTTCCTCAAATGGGGTTCAAAGGCATTCAATAACATGCTTGTTGTTCCTCCTGGATCAGGGATAGTCCACCAGGTTAACTTAGAATATCTTGGCAGAGTTGTGTTCAATACAGACGGTATGCTTTACCCCGATAGTGTAGTTGGGACCGACTCACATACAACTATGATAGATGGCTTGGGTGTTGCTGGGTGGGGAGTTGGTGGAATTGAAGCAGAAGCTGCAATGCTTGGCCAGCCAATGAGCATGGTTCTCCCGGGTGTGGTCGGGTTCAAATTATTAGGCAAACTAAGAGATGGTGTGACAGCTACTGACTTGGTATTGACAGTTACACAAATGCTAAGAAAGCACGGGGTTGTTGGCAAATTCGTTGAGTTCTATGGGGAAGGCATGAGTGAACTGTCTTTGGCAGATCGTGCCACCATTGCAAACATGTCTCCTGAGTATGGTGCAACAATGGGCTTCTTTCCTGTAGATCATGTCACTTTACAATACTTGAAACTGACTGGCAGAAGTGATGAGACTGTCGCCATGATAGAGTCATATTTACGAGCTAATAAGATGTTTGTGGACTACAATGAGCCCCAGGCCGAGAGAGTCTACACTTCATATCTAGACCTCAATCTTGAGGATGTGGAGCCCTGTGTATCAGGTCCAAAGAGGCCTCATGATCGAGTCCCTTTGAAAGAAATGAAGGCAGATTGGCATGCCTGCCTTGACAATAAAGTTGGGTTTAAGGGTTTTGCTGTACCAAAGGAATCTCAGAATAAGGTTGCAGACTTCACTTTCCACGGGGAACCAGCAAAGCTTAGGCATGGAGATGTTGTTATTGCTGCTATCACCAGCTGCACAAATACCTCAAATCCCAGTGTAATGCTTGGAGCTGCACTGGTTGCAAAGAAAGCTTGTGAATTAGGATTGCAGGTTAAGCCATGGATTAAGACCAGTCTTGCTCCAGGTTCTGGTGTTGTGACAAAGTATTTGCAAAAGAGTGGCCTGCAGAAGTATTTGAATCAGCTTGGGTTTCATATTGTTGGGTATGGATGTACCACCTGCATTGGTAATTCAGGGGATATTGATGAAGCTGTTGCATCTGCTATTACCGAAAATGATATAGTAGCTGCAGCTGTATTGTCTGGAAATAGAAATTTTGAGGGACGAGTTCATCCTTTAACAAGGGCTAATTATCTTGCTTCTCCTCCTCTTGTTGTTGCCTATGCCCTTGCTGGCACTGTGGACATTGACTTTGACACTGAACCAGTTGGGCTGGGTAATGATGGAAAGAAGATCTTCTTCAAGGATATTTGGCCTACCAGGGAAGAAATAGCAGATGTTGTACAATCAAGTGTGCTTCCTGATATGTTTAGGGCTACATATGAAGCAATCACCCAAGGAAATCCCATGTGGAATCAGTTATCTGTACCTTCTGGCACTCTCTATGCATGGGACTCTACCTCTACTTATATTCATGAACCGCCTTATTTTCACGATATGAGCATGTCTCCCCCAGGTCCTCATGGGGTAAAGGATGCTTACTGTTTGCTCAACTTTGGAGACAGCATTACAACTGACCACATCTCCCCGGCTGGTAGCATCCACAAGGATAGTCCTGCAGCCAGATACCTCATGGAACGTGGGGTTGATAGACGAGATTTCAACTCCTATGGAAGTCGTCGGGGTAACGATGAGGTGATGGCACGGGGCACTTTTGCTAATATTCGCCTTGTCAACAAACTATTGATCGGAGAAGTTGGACCTAAAACTATTTGTATTCCTACTGGAGAAAAGCTATCCGTTTTTGATGCTGCAATGAAATACAAGAGTGAGGGGCATGAGACAATCGTTTTGGCTGGAACAGAGTATGGAAGTGGAAGTTCTCGTGATTGGGCTGCAAAAGGACCATTGTTATTGGGTGTGAAAGCTGTCATAGCAAAAAGCTTCGAAAGGATTCACCGAAGTAATTTGGTAGGAATGGGTGTCATTCCGCTATGTTTTAAGGCTGGGGAAGATGCTGAGACTCTGGGGTTGACTGGCCACGAACGTTACACCATTAATCTTCCTAGCAGAGTGGATGAAATACGACCTGGTCAAGACGTCACAGTCTTGACTGATAATGGGAAGTCATTTACATGTACCCTAAGATTTGATACAGAGGTTGAACTTGCTTACTTTGATCATGGAGGCATCTTACAATATGTGATCAGAAACTTGATAAATGCTAAACAATAA 3036 0.4437 MNAAFIHRTIRVNLTSPGRDPISERHPNKQPLDRIGPLIFLIEDNNKSRERGVHGSHFHKRRFLPYRHITSLSHDITYYIHSLFLRLCPFHRSGPVTDLLHRSCRRQQITTMASRNPFDNILKTLEKPEGGHFGKYYSLPALNDPRIDRLPYSIRILLESAIRNCDEFQVKRNDIEKIIDWENTSPKLVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGGDSNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFKRNNERFGFLKWGSKAFNNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLLGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIESYLRANKMFVDYNEPQAERVYTSYLDLNLEDVEPCVSGPKRPHDRVPLKEMKADWHACLDNKVGFKGFAVPKESQNKVADFTFHGEPAKLRHGDVVIAAITSCTNTSNPSVMLGAALVAKKACELGLQVKPWIKTSLAPGSGVVTKYLQKSGLQKYLNQLGFHIVGYGCTTCIGNSGDIDEAVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDTEPVGLGNDGKKIFFKDIWPTREEIADVVQSSVLPDMFRATYEAITQGNPMWNQLSVPSGTLYAWDSTSTYIHEPPYFHDMSMSPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAARYLMERGVDRRDFNSYGSRRGNDEVMARGTFANIRLVNKLLIGEVGPKTICIPTGEKLSVFDAAMKYKSEGHETIVLAGTEYGSGSSRDWAAKGPLLLGVKAVIAKSFERIHRSNLVGMGVIPLCFKAGEDAETLGLTGHERYTINLPSRVDEIRPGQDVTVLTDNGKSFTCTLRFDTEVELAYFDHGGILQYVIRNLINAKQ 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0057 1011 FunFam Aconitate hydratase 116 483 - -
Lele52g0057 1011 FunFam cytoplasmic aconitate hydratase 484 707 - -
Lele52g0057 1011 CDD AcnA_IRP_Swivel 785 953 IPR044137 -
Lele52g0057 1011 TIGRFAM aconitase_1: aconitate hydratase 1 134 1007 IPR006249 -
Lele52g0057 1011 CDD AcnA_IRP 197 681 - -
Lele52g0057 1011 Gene3D Aconitase, domain 3 484 707 IPR015931 -
Lele52g0057 1011 Gene3D Aconitase, domain 4 773 1008 IPR015928 -
Lele52g0057 1011 Gene3D Aconitase, domain 3 115 483 IPR015931 -
Lele52g0057 1011 Pfam Aconitase family (aconitate hydratase) 176 679 IPR001030 -
Lele52g0057 1011 ProSitePatterns Aconitase family signature 2. 610 623 IPR018136 -
Lele52g0057 1011 Pfam Aconitase C-terminal domain 808 936 IPR000573 -
Lele52g0057 1011 SUPERFAMILY Aconitase iron-sulfur domain 124 744 IPR036008 -
Lele52g0057 1011 FunFam Aconitate hydratase 772 1008 - -
Lele52g0057 1011 PRINTS Aconitase family signature 258 271 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 311 324 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 401 414 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 483 497 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 282 290 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 548 559 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 325 340 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 610 623 IPR001030 -
Lele52g0057 1011 PRINTS Aconitase family signature 387 400 IPR001030 -
Lele52g0057 1011 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 110 1006 IPR006249 -
Lele52g0057 1011 SUPERFAMILY LeuD/IlvD-like 748 1006 - -
Lele52g0057 1011 ProSitePatterns Aconitase family signature 1. 544 560 IPR018136 -
Lele52g0057 1011 Gene3D - 708 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0057 Lele-ChrLele52 365255 371800 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0049 49 319049 325208 Lele52g0057 52 365255 371800 hybridization
Lele50g0057 50 389962 396192 Lele52g0057 52 365255 371800 hybridization