Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0051 ATGTTTTGCATAATGGTATTTACTTTGTTTCCATCCATCTCTTATGAAATTATTGCAACTCTTTGGACGAGACCTCGGGCATTAAATATTTTAGAGGAACTGAACCCACGATCATCTAACGTTTTGCTGCTTGCCTCCGCTTCTTTCGAATTGCTTTTCAGGCGGATTCTCCTCTCACAAGGACTTCAAGGTCCCCGTCCCCATGGAGAGCCCAGTCTATATCGAGATCCAGGTCAAAGACTCCGCCCAGGGCTAGGTCAAGGTCTCGTTCTAGATCAAGATCCTGGTCAAGACACAGGCCAAGGTCCCGTTCAAGAAGCCGGGGCAGAAAGTCTGCCTGACGCTGAAAATCATGGGAATACTCTCTATGTTACTGGTCTATCTTCAAGGGTTACTGAGAGGAACCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCTTCATGTTTCCTGGTGGTGGAGCCTCGTACACGTATTTCCCGCGGTTTTGCTTTTGTTACGATGGATAGTGCTGAGGATGCAAACCGCTGTATCAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAGCAGTCACGGAGGAAAAGGGCGAGAACTCCTACCCCAGGGCACTATCTTGGTCTCAAAAGCACTAGAGACTATGGTTATCGTGGTGATCGTGGAAGTGATCGTGGAAGGTACCGTGGCAGATCAGGTCGTGATGACTATGCTTATCGTAGGTCACCAAGGCGCTCACCATACCGAGGTGGTCGGGATTCATCACTGCGGCACTCACCCTACGGTGGAAGATCTAGGAGGGACAGATCAAGGTCTCTACCATATTCTCCTTATGGCAGTCCAGACAGGAAGTATACTCGGGGCTCTAGGTGA 882 0.4819 MFCIMVFTLFPSISYEIIATLWTRPRALNILEELNPRSSNVLLLASASFELLFRRILLSQGLQGPRPHGEPSLYRDPGQRLRPGLGQGLVLDQDPGQDTGQGPVQEAGAESLPDAENHGNTLYVTGLSSRVTERNLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSAEDANRCIKYLNQSVLEGRYITVEQSRRKRARTPTPGHYLGLKSTRDYGYRGDRGSDRGRYRGRSGRDDYAYRRSPRRSPYRGGRDSSLRHSPYGGRSRRDRSRSLPYSPYGSPDRKYTRGSR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0051 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 191 IPR000504 GO:0003723
Lele52g0051 293 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 119 277 - -
Lele52g0051 293 MobiDBLite consensus disorder prediction 85 119 - -
Lele52g0051 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Lele52g0051 293 SUPERFAMILY RNA-binding domain, RBD 101 209 IPR035979 GO:0003676
Lele52g0051 293 MobiDBLite consensus disorder prediction 195 293 - -
Lele52g0051 293 Gene3D - 91 204 IPR012677 -
Lele52g0051 293 CDD RRM_RBMX_like 119 198 - -
Lele52g0051 293 SMART rrm1_1 121 194 IPR000504 GO:0003723
Lele52g0051 293 MobiDBLite consensus disorder prediction 217 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0051 Lele-ChrLele52 333957 338564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0051 110 202 Eukaryotic Initiation Factors Gene Family AT1G49760 33.684 1.85e-09 56.6