Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0037 ATGTCAATCGTAACTTCGCCTCACACTAATTTTCTCCAAAAGTATAATCGCCTCCTCAATAAGCCCACCACGCAAAACAACGTTTTTCCTGTTACCTCCATACGCGCCATCAAGACTACCCCACTCAGACCTGTTTCGATCAAATGCGCAGCCACAACTGCCACCCAAACCCAGGATCGTTTCCCGGGTCAGACTCCATCCCAAGATCGGGTCTTCAACTTCGCAGCTGGGCCGGCGACGCTGCCGGAGAACGTACTCCTGAGAGCTCAGTCGGAGCTCTACAACTGGCGCGGATGCGGCATGAGCGTGATGGAGATGAGCCACAGGGGTAAGGAGTTTCTGTCCATAATCCAGAAGGCCGAAGCAGATCTGCGTGCCCTCTTGGAGATCCCACCGGAGTATGCTGTTATGTTCTTGCAAGGCGGCGCCACCACCCAGTTCGCCGCGGTGCCATTGAACCTCTGCAAGCAGGACGATTCGGTGGATTATTTGGTCACTGGGTCGTGGAGTGACAAGGCCTTCAATGAGGCCCAGAAGTACTGCAAATCTAACGTGATTTGGTCTGGTAAATCTGAGAAGTACACGAAGATTCCATCTTTTGATGGGTTGGAGCAGAACCCGCAGGCAAGGTATTTGCATATATGTGCGAATGAGACGATTCATGGGGTGGAGTTCAAGGATTACCCGACCCCAAAGAATCCAAATGGTATATTGGTTGCAGATATGTCTTCAACTTTCTGTTCAAAGCCCGTGGATGTGTCAAAATTTGGTGTGATCTATGCTGGAGCGCAGAAGAATGTAGGGCCATCCGGTGTGACTATTGTGATCGTCAGGAAAGATCTGATAGGAAATGCTCAGGATGTGACTCCTGTGATGCTTGATTACAAGATACAGTCTGAGAACAACTCATTGTACAATACTCCTCCCTGTTATGGCATTTACATGTGTGGGTTGGTCTTTGAGGACCTGTTGGATCAAGGTGGTCTGAAGGAGGTTGAGAAGAAGAACAAGAAGAAGGCTGAAATTCTGTACAACGCCATTGATGCTAGCAATGGATTCTACAGATGCCCAGTTGAGAAGTCTGTGAGGTCGTTGATGAATGTTCCGTTTACACTGGAGAAATCAGAATTAGAGGCAGATTTTATTAAGGAGGCAGCCAAGGAGAAGATGGTTCAGCTTAAGGGACACAGGTCGGTGGGTGGCATGAGAGCTTCCATATACAACGCCATGCCTTTGGCTGGGGTTGAGAAGTTGGTGGCCTTCATGAAGGATTTCCAGGCGAGGCATGCATAG 1293 0.4927 MSIVTSPHTNFLQKYNRLLNKPTTQNNVFPVTSIRAIKTTPLRPVSIKCAATTATQTQDRFPGQTPSQDRVFNFAAGPATLPENVLLRAQSELYNWRGCGMSVMEMSHRGKEFLSIIQKAEADLRALLEIPPEYAVMFLQGGATTQFAAVPLNLCKQDDSVDYLVTGSWSDKAFNEAQKYCKSNVIWSGKSEKYTKIPSFDGLEQNPQARYLHICANETIHGVEFKDYPTPKNPNGILVADMSSTFCSKPVDVSKFGVIYAGAQKNVGPSGVTIVIVRKDLIGNAQDVTPVMLDYKIQSENNSLYNTPPCYGIYMCGLVFEDLLDQGGLKEVEKKNKKKAEILYNAIDASNGFYRCPVEKSVRSLMNVPFTLEKSELEADFIKEAAKEKMVQLKGHRSVGGMRASIYNAMPLAGVEKLVAFMKDFQARHA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0037 430 Gene3D - 84 324 IPR015421 GO:0003824
Lele52g0037 430 Hamap Phosphoserine aminotransferase [serC]. 69 429 IPR022278 GO:0004648|GO:0006564
Lele52g0037 430 Pfam Aminotransferase class-V 71 418 IPR000192 -
Lele52g0037 430 PANTHER PHOSPHOSERINE AMINOTRANSFERASE 67 430 IPR022278 GO:0004648|GO:0006564
Lele52g0037 430 ProSitePatterns Aminotransferases class-V pyridoxal-phosphate attachment site. 256 275 IPR020578 -
Lele52g0037 430 CDD PSAT_like 72 426 IPR022278 GO:0004648|GO:0006564
Lele52g0037 430 TIGRFAM serC_1: phosphoserine transaminase 71 429 IPR022278 GO:0004648|GO:0006564
Lele52g0037 430 Gene3D Aspartate Aminotransferase, domain 1 326 430 IPR015422 GO:0003824
Lele52g0037 430 SUPERFAMILY PLP-dependent transferases 69 427 IPR015424 -
Lele52g0037 430 FunFam Phosphoserine aminotransferase 83 325 - -
Lele52g0037 430 FunFam Phosphoserine aminotransferase 326 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0037 Lele-ChrLele52 245607 246899 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0037 52 245607 246899 Lele53g1249 53 21096988 21101468 CCT
Lele52g0037 52 245607 246899 Lele54g1222 54 17727771 17728237 CCT
Lele52g0037 52 245607 246899 Lele56g0225 56 1819773 1823218 CCT
Lele49g0030 49 204026 205318 Lele52g0037 52 245607 246899 hybridization
Lele50g0035 50 252414 253706 Lele52g0037 52 245607 246899 hybridization