Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0035 ATGGGAGGTGACAGTGCCGTTGATGATGCCACCGCCACCCAGTCCAAGGGCGGTGAGGGAGTGAATATCAACGTTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATTAGCCTCGAATCCACCGTCGGATTGTTCAAGGAGCTTGTCGCACGGAATTGCGATATCCCCGCCGATCAACAGCGGCTGATTTACAAGGGCCGGATCTTAAAGGACGATCAAATTCTGCAAAGCTACGGTCTGGAGGCAGATCATACTGTCCATTTGGTTCGTGGCTTTGCCCCAGCTGCTGCAGCCAATTCAGTTGGTGGGACCAATACCAGTGCTACAAATACCACAACAAATAATGCAACAGGTGCTGCTAATGAAGGTGGGGGTCTTGGAGGTTCTGGTTTTGGAGATTCACTGTTTCCTGGACTAGGCACCAATGGGCTTGGGGGAAGTGGCATCAATGGCTTGTTTGGAGCAGGCCTTTTGGATCCTGAACAAATGCAGCAATCATTTATTTCAAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTACTTAATAATCCTGAGATAATGCGGAGTTTTATTATGAGCAATCCACAATTACGAGAGCTTATGGACCGAAATCCTGAGCTAGCACACATACTTAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACGAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGTTTCAACATGCTGAGACGCATGTACGAAAATGTTCAAGAGCCATTCTTAGATGCTACAACAATGGCTGGTAATACAGGAAATGACAACTCTAACCCGTTTGCTGCACTTTTGGGCACTCAAGGTGGACAAGCCAGGGATCGATCTACTAATCCTTCAACTACTAGTGCTGAAGCAACTGCTGGCTCTCCCTCCCCTAATACTAATCCGCTTCCTAATCCTTGGACCTCTACTGGATCTGGAGGTGCTCAAAATAATACTGCGAGGACAACCACAGGTGGGGACACTAGGCAGCAGGCACCCGCTGGCTTAGGAGGACTTGGTTTGCCGGATTATCAAGGTCTGCTGGGTTCTATGCCTGATCCCGCCTCATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAATATCCTTTCCAACCCACAGGCTATGAACCAGATTCTTGGTGTCAATCCTGACCAACGTGGCTTACCAGATCTAAATTCTCATCTTAGAGAAATGACTCAAAATCCTGAGTTCCTTCGTTTGTTGTCTTCACCCGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAACTCTTCTTTCTCAGCTTGGTCGGCCACCTTCAACACAGGAATCAGGTCAGACTGGTGGAGGCACTGGAACGATGAATAACTCGGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGGGCTGGTAGCCTTGCAGTTCCGAACAGATCCAATGAGCCACCGGAGCAAATGTATGCCACCCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACGCAAGAGAACATTCGAGCGCTCATCGCCACTCAAGGTAATGTTCACGCGGCAGTTGAACGGCTTCTGGGCAACTCTGGCCAGTAG 1659 0.4774 MGGDSAVDDATATQSKGGEGVNINVRCSNGSKFSVQISLESTVGLFKELVARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAANSVGGTNTSATNTTTNNATGAANEGGGLGGSGFGDSLFPGLGTNGLGGSGINGLFGAGLLDPEQMQQSFISNPNMMREMMNTPAIQNLLNNPEIMRSFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFAALLGTQGGQARDRSTNPSTTSAEATAGSPSPNTNPLPNPWTSTGSGGAQNNTARTTTGGDTRQQAPAGLGGLGLPDYQGLLGSMPDPASLTQLMQNPAISQMMQNILSNPQAMNQILGVNPDQRGLPDLNSHLREMTQNPEFLRLLSSPETMQQLLSFQQTLLSQLGRPPSTQESGQTGGGTGTMNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQMYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0035 552 SMART ubq_7 21 92 IPR000626 GO:0005515
Lele52g0035 552 CDD Ubl_Dsk2p_like 21 93 - -
Lele52g0035 552 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Lele52g0035 552 SUPERFAMILY Ubiquitin-like 12 108 IPR029071 -
Lele52g0035 552 CDD UBA_PLICs 510 548 - -
Lele52g0035 552 MobiDBLite consensus disorder prediction 277 354 - -
Lele52g0035 552 MobiDBLite consensus disorder prediction 101 122 - -
Lele52g0035 552 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Lele52g0035 552 Gene3D - 196 254 - -
Lele52g0035 552 Gene3D - 492 552 - -
Lele52g0035 552 PANTHER UBIQUILIN 16 547 IPR015496 -
Lele52g0035 552 SUPERFAMILY UBA-like 506 548 IPR009060 GO:0005515
Lele52g0035 552 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 504 549 IPR015940 -
Lele52g0035 552 FunFam Ubiquitin domain-containing protein DSK2b 493 551 - -
Lele52g0035 552 SMART CBM 411 446 IPR006636 -
Lele52g0035 552 SMART CBM 201 240 IPR006636 -
Lele52g0035 552 SMART CBM 365 407 IPR006636 -
Lele52g0035 552 SMART CBM 151 188 IPR006636 -
Lele52g0035 552 SMART uba_6 510 548 IPR015940 -
Lele52g0035 552 MobiDBLite consensus disorder prediction 277 363 - -
Lele52g0035 552 Pfam UBA/TS-N domain 510 546 IPR015940 -
Lele52g0035 552 MobiDBLite consensus disorder prediction 101 121 - -
Lele52g0035 552 MobiDBLite consensus disorder prediction 1 21 - -
Lele52g0035 552 MobiDBLite consensus disorder prediction 457 479 - -
Lele52g0035 552 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Lele52g0035 552 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Lele52g0035 552 Gene3D - 8 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0035 Lele-ChrLele52 230511 235921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0035 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.27e-06 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0035 52 230511 235921 Lele53g1245 53 21071885 21082330 CCT
Lele52g0035 52 230511 235921 Lele54g1217 54 17689775 17699069 CCT
Lele52g0035 52 230511 235921 Lele55g0240 55 1472797 1482900 CCT
Lele52g0035 52 230511 235921 Lele56g0229 56 1844110 1853420 CCT
Lele49g0028 49 184455 190270 Lele52g0035 52 230511 235921 hybridization
Lele50g0033 50 235007 240452 Lele52g0035 52 230511 235921 hybridization