Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0031 ATGGGTCTATGCTTTGGGTCTCCCGCTCACGATGACGGACCGGCGTCTAGTGTCACCAGAAATCCATATTCAGGTTCAGCGAGTACTGACAGTAGGAACGTTGGGTTCTCTACTACGAACAGCAGTGCGGCAAAGAGTCAATTTTCAGAACTAGCAAGCGGGAACCTCGGGGATTCCCTTCCTGCCCCCAACGGGCAAATTCTAGAAACTCCAAACCTGAAGGTATTCAGTTTTGCAGACTTGAAAGCAGCCACAAAGAACTTCAAACCCGATACATTGCTCGGTGAAGGTGGTTTTGGTAAAGTTTACAAAGGTTGGCTGGATGAGAAGACACTGGCACCATCTAAGGCAGGGTCTGGAATTGTGGTTGCTATTAAAAAATTGAACCCAGAAAGTGTGCAAGGATTCCAAGAGTGGCAGTCAGAAGTCAATTTCTTAGGAAGGCTTTCTCATCCCAACTTGGTCAAGCTATTAGGTTACTGTTGGGATGCTGAGGAGCTGCTGCTTGTGTATGAGTTCATGCCGAAGGGAAGTTTGGAGAATCATCTCTTTAGAAGAAATCCTAACATCCAACCACTTTCTTGGAACATGAGACTCAAAATAGCTAGTGGTGCAGCTCGAGGCCTGGCCTTTTTGCACACTTCAGAAAAGCAAGTGATATACAGAGATTTCAAGGCCTCAAATATACTACTTGATGGGAATTATAATGCAAAAATTTCTGACTTTGGCTTGGCGAAATTGGGGCCATCAGGGGGAGAATCGCATGTTACAACTAGGGTTATGGGCACTTATGGCTATGCTGCTCCAGAATACGTTGCTACAGGCCACTTGTATGTAAAGAGCGATGTGTATGGATTTGGTGTAGTGCAGCTTGAAATGCTGACAGGTTTGAGGGCACTTGATACGAGGCGACCAAGCGGGCAGCAGAATCTGGTTGAATGGGTGAAGCCGTATCTGTCTAGCAAAAGAAAGTTGAAAACGGTTATGGACGCTAGGATTCAGGGTCAATATTCACTCAAGGCAGCATCACAGGCAGCTAAGCTTACTCTGAAATGCCTACAACCTGACCCTAGACACCGTCCTTCCATGAAAGAAGTAGTTGAGGAATTGGAACGCATTGAAGAATCAAAGACCGTAAAAGTTTAA 1146 0.4572 MGLCFGSPAHDDGPASSVTRNPYSGSASTDSRNVGFSTTNSSAAKSQFSELASGNLGDSLPAPNGQILETPNLKVFSFADLKAATKNFKPDTLLGEGGFGKVYKGWLDEKTLAPSKAGSGIVVAIKKLNPESVQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDAEELLLVYEFMPKGSLENHLFRRNPNIQPLSWNMRLKIASGAARGLAFLHTSEKQVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGESHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVQLEMLTGLRALDTRRPSGQQNLVEWVKPYLSSKRKLKTVMDARIQGQYSLKAASQAAKLTLKCLQPDPRHRPSMKEVVEELERIEESKTVKV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0031 381 Gene3D Transferase(Phosphotransferase) domain 1 174 381 - -
Lele52g0031 381 FunFam Serine/threonine-protein kinase BIK1 58 173 - -
Lele52g0031 381 Pfam Protein tyrosine and serine/threonine kinase 92 370 IPR001245 GO:0004672|GO:0006468
Lele52g0031 381 Gene3D Phosphorylase Kinase; domain 1 61 173 - -
Lele52g0031 381 MobiDBLite consensus disorder prediction 17 39 - -
Lele52g0031 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Lele52g0031 381 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0031 381 ProSitePatterns Protein kinases ATP-binding region signature. 94 127 IPR017441 GO:0005524
Lele52g0031 381 SUPERFAMILY Protein kinase-like (PK-like) 66 371 IPR011009 -
Lele52g0031 381 CDD STKc_IRAK 94 373 - -
Lele52g0031 381 MobiDBLite consensus disorder prediction 1 39 - -
Lele52g0031 381 PANTHER OS01G0588500 PROTEIN-RELATED 42 374 - -
Lele52g0031 381 FunFam Serine/threonine-protein kinase PBS1 174 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0031 Lele-ChrLele52 211136 214399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0031 74 370 Glycoside Hydrolase AT3G07070 51.342 6.89e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele52g0031 PK_Tyr_Ser-Thr 2.2e-47 CL0016