Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0030 ATGGATTCCAGATTCCATTGCTCATTTCGATCGAAGCTTTTGTTTCTTATGCGAAAAATGTTTTTGGGCCGACTGGGGATTGGCAATTTTCGAAATTTTGTTTATGTTGCAGAGTTGATCAGGAGCGTGCATGTCTACCGACTGAGGGATGGGAGGGAAAGCGAGGTTGAAAGAGAGTTTGTATTTTCACGGAGTGGCTCATACGGAGAAATGCGGGCTACCCCACTTCTTAGATTACAGAAATTTTGTGCTTCCGAAGTTTCCGAAGGGTATCAGAATGGAGTATGGCTTTGTCTGCTCAAAGGTGAAACAGATCATTTGCATGTATATGACATAGTTATATGTGATTTCCTTGGATATCGTGTATGTCACATTTGGAATCCCAAGCTTCAGATGATCCCAACATTGCTTAATGATCTCCATCTGATACATGAGTTGAACTGTAAATCAAAAGAGAATGATATGCTGCAAATCTCTCCCGATGAAAGATGCCAAGGAAACAGCAATGATAGCCATCAGCCAAGAAAAATTTTGATCCAGGATCATAATTGTCTTCCTTATCCAGATGACATGCCTGAGTTACAAGACAAGGAAGCAGATGAAGAAAGTTTAGGCATGTCTGAGATTCCAGGGAATGAATCAGATGATGAAAGTCTAGACCCAGCTGAGTTACCAGACAATGACATCATTGACGAAAGTTTGCCAGGTAGCATGGAGAAGAAAAAGAGGGCAGCTAGTAAAGATGTAGCAAGCATAGGTTTGGCAGATCTGGTGAAGTACTTTGATGTGCCAATTGTAGAAGCATCAAGAAATCTAAAAGTTGGACTTACTGTACTAAAGAGGAAGTGCAGAGAATTTGGTATTCCCCGCTGGCCTCATAGGAAGATTAAATCGCTTGACAATCTCATTCATGATCTTCAGGAAGTGGTAGAAAATGAAGAAATAGAGAATGATGCTGCTGTTATGGCTGTGACGAAGAGGCAAAAGATGCTCGAGTGTGAAAAAGAAATTATTGAGAGGAAACCCTCTATGGACATCCAAAGAGAAACCAAGAGATTCAGGCAGGATATCACTGAAATCGATCCAGTTCTGCTTCTAATAATTATAAAAGCATACTTGTTCCTTTTTGACCTGGAGACATTTGAAGCTCAGCCAACGCAAGACGATTTCCAATCAGAAATTCTACTTGTTCTGAAACAGTGTGGGCTTGGACTTGGGGGTAGTATGGTCGGGAAGATTGCTGCTTCACTGGAACAGTGGAAATGGGGTAAGTTTCCATTTCATTTAATTCTCTCTACAAATGTATGGATTGGGGAGCAGTGA 1323 0.4112 MDSRFHCSFRSKLLFLMRKMFLGRLGIGNFRNFVYVAELIRSVHVYRLRDGRESEVEREFVFSRSGSYGEMRATPLLRLQKFCASEVSEGYQNGVWLCLLKGETDHLHVYDIVICDFLGYRVCHIWNPKLQMIPTLLNDLHLIHELNCKSKENDMLQISPDERCQGNSNDSHQPRKILIQDHNCLPYPDDMPELQDKEADEESLGMSEIPGNESDDESLDPAELPDNDIIDESLPGSMEKKKRAASKDVASIGLADLVKYFDVPIVEASRNLKVGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLQEVVENEEIENDAAVMAVTKRQKMLECEKEIIERKPSMDIQRETKRFRQDITEIDPVLLLIIIKAYLFLFDLETFEAQPTQDDFQSEILLVLKQCGLGLGGSMVGKIAASLEQWKWGKFPFHLILSTNVWIGEQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0030 440 ProSiteProfiles RWP-RK domain profile. 234 319 IPR003035 -
Lele52g0030 440 PANTHER PROTEIN RKD4 154 357 IPR044607 GO:0003700
Lele52g0030 440 Pfam RWP-RK domain 252 299 IPR003035 -
Lele52g0030 440 Coils Coil 296 316 - -
Lele52g0030 440 MobiDBLite consensus disorder prediction 189 242 - -
Lele52g0030 440 MobiDBLite consensus disorder prediction 213 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0030 Lele-ChrLele52 196054 204291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0030 37 356 AtRKD Transcription Factor Family AT4G35590 43.202 3.25e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele52g0030 RWP-RK 7.8e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0024 49 159332 169471 Lele52g0030 52 196054 204291 hybridization
Lele50g0028 50 204825 211400 Lele52g0030 52 196054 204291 hybridization