Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0021 ATGTCCTGCTCCTCGTCGTCAGGGTCCGAGGAGGATGATGAGGGCTTCGAATCCTACAGGAAAGGAGGCTACCATGCCGTCCGGGTCGGCGATCAGTTCGCCAGCGGCAGGTACATAGCACAGAGGAAGCTTGGTTGGGGTCAGTTCTCTACTGTGTGGCTTGCTTACGATACTCGCACCTCTGTACGTTTGATCCTTCCTCTTGTATTGCTGCGTCGTGAATTTACATACGTTGCTCTTAAGATCCAGAAGAGTGCAGCCCAGTTTACTCAGGCTGCCCTTCATGAGATTAGTGTTCTTTCATCTATTGCTGATGGTGACCCTTCAAATTCAAAATGTGTTGTCCATTTGATCGACCACTTTAAGCATACAGGTCCAAATGGACAGCACCTTTGTATGGTCCTTGAGTTTCTTGGTGATAGTTTGCTTCGTCTGATCAGATATAACCGTTACAAAGGCCTTCCATTAAATACAGTTAGGGAGATCTGCAAATGTATTTTGATTGGTCTGGATTACTTGCACAGAGAACTTGGTATAATCCACACTGATCTAAAACCTGAAAACATTCTTCTCTTTTCTTCTATTGATGCTTCCAAAGACCCTGTCAGATCTGGACTTTCCCCAATCCTAGAGAGGCCAGAGGGAAACCCAACTGGGGGAGTCACGAGTCTTATTGAGAAAAGGTTAAAAAGGAGGGCATGGAGGGCAGTTGCTAAGATATTTGAAAAGCGTGATTCAATGGGAGAAGCAGGACAAGCTCGGCAGTCTGAAAGAAATGTTGAAGGGATTGATATGAGATGCAAGATAGTGGATTTAGGAAATGCATGTTGGGCTGATAAGAAAATTGCTGAAGAAATCCAGACAAGGCAGTACAGAGCTCCTGAAGTAATATTGCAGGCTGGTTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCGCTGCTTTTGAACTTGCCACTGGTGATATGATGTTTAGCCCAAAAGGTGGACAAGACTTTAGTGAAGATGAGGATCACCTAGCCATGATGATGGAACTTCTTGGAAAAATTCCCCGGAGGGTGAGTACATTCCTGTTGTTTGGTATGATTCTTGGAAAAGCTATTCTAGCATGTCTAACACATGGGTTGCAGGTTGCAATCTCTGGAGCTCGATCCAAGGATTACTTTGATAGACATGGGGATCTAAAACAGATTCGGAGGCTAAAATTCTGGTCGCTCGATAAATTGTTGATTGATCGATACAAATTTTCAGAGAATGATGCAAGGGAGTTCTCAGACTTTCTTCTGCCGCTTCTTGATTTTACGCCAGAGAACCGACCAACAGCCCAGCAGGGCCTGCAACATCCTTGGTTTAGTGGTAAGGATTCAACTCGTGAAAAGAGAAATGAGCCTAGTGTGGAAAAGGTTGGTGTTGGGTTGAGCGACCTTAAAATCAAGGGGGGGAAAGTGAAGGGTGTTTTACAATAG 1467 0.4472 MSCSSSSGSEEDDEGFESYRKGGYHAVRVGDQFASGRYIAQRKLGWGQFSTVWLAYDTRTSVRLILPLVLLRREFTYVALKIQKSAAQFTQAALHEISVLSSIADGDPSNSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNTVREICKCILIGLDYLHRELGIIHTDLKPENILLFSSIDASKDPVRSGLSPILERPEGNPTGGVTSLIEKRLKRRAWRAVAKIFEKRDSMGEAGQARQSERNVEGIDMRCKIVDLGNACWADKKIAEEIQTRQYRAPEVILQAGYSFSVDMWSFACAAFELATGDMMFSPKGGQDFSEDEDHLAMMMELLGKIPRRVSTFLLFGMILGKAILACLTHGLQVAISGARSKDYFDRHGDLKQIRRLKFWSLDKLLIDRYKFSENDAREFSDFLLPLLDFTPENRPTAQQGLQHPWFSGKDSTREKRNEPSVEKVGVGLSDLKIKGGKVKGVLQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0021 488 Gene3D Phosphorylase Kinase; domain 1 24 137 - -
Lele52g0021 488 SUPERFAMILY Protein kinase-like (PK-like) 32 457 IPR011009 -
Lele52g0021 488 Pfam Protein kinase domain 266 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0021 488 Pfam Protein kinase domain 40 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0021 488 ProSiteProfiles Protein kinase domain profile. 38 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0021 488 MobiDBLite consensus disorder prediction 439 468 - -
Lele52g0021 488 Gene3D Transferase(Phosphotransferase) domain 1 106 451 - -
Lele52g0021 488 CDD STKc_SRPK 27 451 - -
Lele52g0021 488 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 218 - -
Lele52g0021 488 SMART serkin_6 38 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele52g0021 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0021 Lele-ChrLele52 141668 145131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0021 4 452 EF-hand Containing Proteins AT5G22840 45.817 4.45e-155 450
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lele52g0021 Pkinase 1.7e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0021 52 141668 145131 Lele52g0021 52 141668 145131 ECH
Lele49g0017 49 109051 112204 Lele52g0021 52 141668 145131 hybridization
Lele50g0020 50 153343 162194 Lele52g0021 52 141668 145131 hybridization