Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0012 ATGACTCGAACGCTTAGATTTCTCAATTCTCTCAACACCGTCTCCGCTGCTCCCCCTCCCGAGGCCGTCGCCGTCGAATCCGACTTCGTCGTTATTCTCGCCGCCCTCCTCTGCGCCCTCATATGCGTCGTAGGCCTCATCGCCGTCGCCCGCTGCGCCTGGCTCCGCCGCGGATCCGGCGCCTCCGCCTCCCCCGCGAGGGCTCTGGCCAACAAGGGTCTCAAGAAGAAAGTTCTGCAATCGCTCCCCAGATTCGCCTATGTTGACAGCAGTCCGCACAAGTGGGTGGCTACATCGGAGTGCGCGATTTGCCTGGCGGAGTTCGCCGAGGGCGACGAGATCCGGGTGCTCCCTCAGTGCGGGCACGGCTTTCACTTGGCCTGCATCGACACGTGGCTGGGGTCCCACTCTTCGTGCCCTTCTTGTCGGCAGATTCTGGCGGTGGCCAGGTGCCAGAGGTGCGGCCAGTACCCGGCGGTAGGAGGCGGGGGATCGGCCGGAGCCACCAGCAGCTCCGCCGGTGAACCTAAGCTGAAGTCCAGGGAGGATGACAATGGCGCTTCTGCCGCCGTTAATAACGACATAAGCTGCGGGTTTAATAGTAATTACCTGCCTTGA 618 0.6262 MTRTLRFLNSLNTVSAAPPPEAVAVESDFVVILAALLCALICVVGLIAVARCAWLRRGSGASASPARALANKGLKKKVLQSLPRFAYVDSSPHKWVATSECAICLAEFAEGDEIRVLPQCGHGFHLACIDTWLGSHSSCPSCRQILAVARCQRCGQYPAVGGGGSAGATSSSAGEPKLKSREDDNGASAAVNNDISCGFNSNYLP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0012 205 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lele52g0012 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 148 IPR013083 -
Lele52g0012 205 FunFam E3 ubiquitin-protein ligase ATL6 62 149 - -
Lele52g0012 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 21 155 - -
Lele52g0012 205 CDD RING-H2_PA-TM-RING 100 143 - -
Lele52g0012 205 SMART FANCL_C_2 97 151 - -
Lele52g0012 205 SMART ring_2 101 142 IPR001841 -
Lele52g0012 205 Pfam Ring finger domain 100 143 IPR001841 -
Lele52g0012 205 SUPERFAMILY RING/U-box 79 148 - -
Lele52g0012 205 MobiDBLite consensus disorder prediction 161 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0012 Lele-ChrLele52 99346 99963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0012 1 154 C3H Transcription Factor Family AT1G20823 63.030 2.65e-63 193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g0012 52 99346 99963 Lele52g0012 52 99346 99963 ECH
Lele51g0013 51 88367 88984 Lele52g0012 52 99346 99963 ECH
Lele49g0011 49 83601 84209 Lele52g0012 52 99346 99963 hybridization