Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g0004 ATGAGTAATACCAACGAAAACGAGGAATCTGCCCAGAATGTGCCAGAGAGTGGGGACCAAAGCAAGCGGTTGGTTGATTCACAAGTTCAACTCGAGGCTTCTTCTACTTCTGTTCCAGAAGAGATAACCACGAATAGTGTTGAAAATGTGAAGGTAGAGGCACCTGATGGGGATAAAAAACTGGAACCAGAGGTTATGTTGGAGGGTACTCAACAACAAGAAGTTCAAAATGTTCTTCAATCCGTCCCAGTAGAATCCAATTCTCAAATTTTGGTTAAAGTTGAGTCAGAACACGTATCTGATGTGAAGAGCGAGGTCAAAGAATTTTCACAGACAGATACGGGGATAGAGAGTGATGCTCTTGTTGGTGAGAAAAATGCTGATACAGCTGAAACAGTTAAGAATGTCAAGCCTGAAGCTTGTGAAGTCACTGCCAGTAAAACTTGCAACAATGGTGATTCCACACCCATGGGTCATAACGAACCTGCAACACCGCTACCTGTTCCTGTTGATACAAACACTGGGATGGAGAATGGCATAAAAGTTGAGACTAAGGTCCATGAAGAGCATGCTGCAACACTTGTAGATAAAGGGAATTCAAACACGAAGCACTCTTTTTTAGATATTGACTATGATGGAAATGAGTCAGGTACCGAAGCAGAGCAGTCTGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTTAAACCTCCTAAGTTCTATGGAGAGGGGCTTAATTGTCTTAAGTTGTGGAGAGCAGTGACCAGACTGGGTGGCTATGACAAGGTAACCTCGTGTAAATTATGGAGGCAAGTTGGAGAGTCTTTCAAGCCTCCAAAAACATGTACAACTGTATCATGGACATTTCGAGGATTTTATGAAAAGGCTCTTCTTGATTATGAAAGGCATAAAACAATAGGTGGTGAGCTTACTGTTCCTATTGCTTCTCATTCAGAGCCTATAAATATCGAAAATCAGGCTTCAGCATCGGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCACTCACAACGGCTTCTTGGTAACGGTGAAGTTAGTGACCCGATTATTAAGGATAGGACGTCCATGCCCATGCAGAAGCGTGAAAAGCAGCTTAAAAGCATCAATCTGCTAAAACGTAAGAAACAATCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCAAAGCCACAATTGGACACCGCAGTTGTTGATATTGGACCTCCTGCTGATTGGGTAAAGATAAATGTCCAAAAAACTAAGGATTGTTTTGAGGTCTATGCATTAGTTCCTGGCCTTCTGCGAGAAGAGGTCCGTGTTCAATCAGACCCAGCAGGACGTTTAGTCATTAGTGGTGAACCTGAGCATCCCGATAATCCTTGGGGGGTGACACCTTTCAAAAAGGTTGTAAGCTTGCCTTCAAGGATTGATCCTCATCAGACATCAGCTGTGGTTACATTGCACGGACAGCTGTTCGTTCGTGTCCCATTTGAACAATCGGAGTAG 1542 0.4351 MSNTNENEESAQNVPESGDQSKRLVDSQVQLEASSTSVPEEITTNSVENVKVEAPDGDKKLEPEVMLEGTQQQEVQNVLQSVPVESNSQILVKVESEHVSDVKSEVKEFSQTDTGIESDALVGEKNADTAETVKNVKPEACEVTASKTCNNGDSTPMGHNEPATPLPVPVDTNTGMENGIKVETKVHEEHAATLVDKGNSNTKHSFLDIDYDGNESGTEAEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTIGGELTVPIASHSEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRTSMPMQKREKQLKSINLLKRKKQSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g0004 513 CDD ARID 221 306 - -
Lele52g0004 513 MobiDBLite consensus disorder prediction 151 171 - -
Lele52g0004 513 SMART bright_3 220 311 IPR001606 GO:0003677
Lele52g0004 513 MobiDBLite consensus disorder prediction 1 50 - -
Lele52g0004 513 Gene3D - 389 513 IPR008978 -
Lele52g0004 513 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 55 512 IPR045147 GO:0006357
Lele52g0004 513 ProSiteProfiles ARID domain profile. 219 310 IPR001606 GO:0003677
Lele52g0004 513 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 413 513 IPR002068 -
Lele52g0004 513 Gene3D - 219 314 IPR036431 GO:0003677
Lele52g0004 513 Pfam ARID/BRIGHT DNA binding domain 222 306 IPR001606 GO:0003677
Lele52g0004 513 FunFam AT-rich interactive domain-containing protein 3 405 513 - -
Lele52g0004 513 SMART ARID_2 216 306 - -
Lele52g0004 513 CDD ACD_sHsps-like 428 508 - -
Lele52g0004 513 FunFam AT-rich interactive domain-containing protein 3 219 318 - -
Lele52g0004 513 Pfam Hsp20/alpha crystallin family 430 512 IPR002068 -
Lele52g0004 513 SUPERFAMILY HSP20-like chaperones 422 509 IPR008978 -
Lele52g0004 513 SUPERFAMILY ARID-like 212 322 IPR036431 GO:0003677
Lele52g0004 513 MobiDBLite consensus disorder prediction 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g0004 Lele-ChrLele52 33247 41213 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g0004 214 511 ARID Transcription Factor Family AT1G76510 64.356 8.93e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele52g0004 HSP20 7.4e-06 CL0190