Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1683 ATGGGCCGAGGGAAGATAGAGATCAAGAGGATTCTGAACACGACCACCAGACAGGTGACCTTCTCAAAACGCAGAGCTGGACTTGTGAAGAAGACTCATGAGCTTTCTGTTCTCTGTGATGCTCAAATTGGCCTCATCATCTTCTCCAGCACCGGCAAGTTGTTTCAGTACTGCAGCGAACCTTTCAGGATGGAGCAGATCATTGATAGATACCAGAAAGCTACGGGAGTACGCATACCTGAACATGATAGTCGGGAAGATTTATTCAGTGAAATGGCAATGCTGAGGCAGGAAACTCTGCGTCTAGAACTGGGAATTCAAAGGTACATTGGCGACAGCATGGGAAGTTTACAGTACGAGGAACTGACAAAACTGGAACAAGACCTGGAGATATCTGTCACCAAGGTCCGAAATCGCAAGAATGATCTGTTGCAACAGCAGCTGGATAATCTGCGCAGAAAGGAAAGAATGATGGAAGAAGAGAACGGCTATCTGGCCCATTGGATTGAGGAGCAGCGAGGAGGAGGAGGAGGAGGAGTGATATCAATATCATCAATGGAGAATCATCATCATGATGAGCAAATGGATCAGTTGCCATTCTACGAGGGCCAAACGTCTCTTGAACTTGCTCCTCTCCACCTTCATCCCTATCTTCAGCTTGCCCAGCCCAACATTCATCCCCGTTGA 687 0.4745 MGRGKIEIKRILNTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKLFQYCSEPFRMEQIIDRYQKATGVRIPEHDSREDLFSEMAMLRQETLRLELGIQRYIGDSMGSLQYEELTKLEQDLEISVTKVRNRKNDLLQQQLDNLRRKERMMEEENGYLAHWIEEQRGGGGGGVISISSMENHHHDEQMDQLPFYEGQTSLELAPLHLHPYLQLAQPNIHPR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1683 228 Coils Coil 141 161 - -
Lele51g1683 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele51g1683 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Lele51g1683 228 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele51g1683 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele51g1683 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele51g1683 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele51g1683 228 Pfam K-box region 81 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele51g1683 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele51g1683 228 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Lele51g1683 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele51g1683 228 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele51g1683 228 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Lele51g1683 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1683 Lele-ChrLele51 17851132 17852480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1683 1 225 MADS-box Gene Family AT5G23260 48.361 4.97e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele51g1683 K-box 4.9e-20 No_clan