Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1679 ATGGCCCCCCTAACAGGCAACGAAAACGCACAGCATAGGCGCGCTGCTGGTACACTGAGAGCCTTGGTTCAAACGTTCGCTTACCAAAACCCTAAAACTCAACGAACGTTGGGTTTTTTTCAAGCTTTTCTTTCCCCTCTGGTTTCTGAAGCTCCTTTGTCTATTCTTTGCGTTTCTAAGATGGGCAAATCCAGCAAGAAATCGGCTCCCAAAGTTGATTCTTCTCCGGCTGTTGTTCCACCTTCGAAGTCTGCAAAGAAAGGCAAGAGGGAAGCTGAGGAAGAACTTGAGAAGCAAGTGAGTGCAAAGAAGCAGAAGAGAGATGAAGTTACTGAGAAGAAGAATTCCAAGGTGCAGAAAAACAAGAAGGAAAGTAGTTCAGATGATTCCTCTTCCTCAGATTCCGAGGAAGACAAGAAAACTGCCACAAAAGCTGTTCTTCCATCAAAGAAGCAACCTTCTAAGAATGGTGCTCTAAGTGGCCGGTTGAACAAAGGCAAGCCAGCTAGTAGTTCCTCTTCTGAATCCTCTGATGATGAATCTGATAGTGATGATGATGTGAGAACTAAAGTTGCCCCGCTAAGCAAGAAGGTACCTGTTGCTGCAGCTAAGAAAGTTGAATCAGACTCAGAATCTGAAAGCAGCGCTGATGAGGATGATGTCCGTACTAAATCATCCAAGAAGTTGTCTGCTGCGCCTGCTGCAGGTAAACCTACACCTGCCAAAAAAATTGAGTCAAGTGATGACACAACCTCTGATGATAGCTCGGATGAAGATGATGATCTAGCAACAAAGGTACCTGCTGCATCAAAGAAGTTGCCTGCAACAGCAGTTCCTTCAAAGAAGAAAGTTGAGAGCAGTGGAAGCTCCGAAGATGAATCAAGTGAAAGCTCTGATGAAGATAATGGTATGAAGTCTTCTGTCAAAGCAGTTTCCAAGCCTTCCATTGCTTCAAAGAAGGTTGAATCAAGTGAGAGCTCAGATTCTGATAGCAGTAGCTCTGATGAAGACAACAAAAATAAAAAAGGAGCCAATACTGCTTCCAGTATCAAGCCAGCAAAGGCTTCTGAGAAGAAATCCAAGTCAAAGGATAGTTCTGATGAGACTGATTCTGATGACGAGGAGGATAAGATGGATGTTGACGAGGACAGTAGTTCTGAAGAAAGTGAGGAGGAGGCTCAAAAGAAAAAGTCTGTAAAAGTTTTAAAGGAAAGCAATGAAAGTTCAGAGAGCTCAGATGATAGCGATGATGAGAAAGAGACACCCTCCAAGGCTCAGAAAAATGCTAAGAATGTGGAGGATGTCGACGCTGCATCAGCGAAGTCAAATGGAAAGAAAGCTCGTAGCACCCCAGCTACTCCAAAAGTACAGAATGGAATGTCAAAGACTCTGTTTGTTGGAAATTTATCATTTAAAGTAGAACAGACTGATGTGGAAAACTTCTTTAAAGATTGTGGAGAAGTGGTTGAAGTCCGTTTATCCTCAGATGAAAATGGGAGATTTAAAGGCTTTGGGCATGTTGAATTTGCCACGGCAGAAGCAGCACAAAATGCCCTTGAGTTGAATGGGGAAGAATTGCTTCAGCGTCCCGTCAAACTTGATTTAGCTCGTGAAAAGGGGGCATATACCCCCAATAGCGGCAACTGGAGCAATTCATTCCAGAAAGGAGGACAGGCTCAATCTCATACATTATTTGTTAAGGGTTTTGATACATCCCAAGGGGAAGATGAGATTAGAACGAACCTGAAAGAGCATTTCAATTGTGGAGAGATTACAAGGATATCAATTCCTAAAGATTATGAGACTGGTGCTGCCAAGGGATTTGCCTACATGGATTTCAAGGATGCTAATGCCTTAAACAAGGCGCTAGAATTGAATGGAAGTGAGCTTGGAGGTGGTTATTATTTGACGGTTGATGAGGCAAAACCTCGAGGTGATAATCAAGGTGCAAGTGGTGGTAGTCAATTTGGGGGAAGAGGCGGCAGAGGTGGTGGAAGGAGTGGTGGCAGAGGTGGTGGTGGTCAATTTGGGGGAAGAGGTGGTGGTGGTCAATTTGGGGGAAGAGGTGGCCGAGGTGGTCGTGGAAGAGGTGGCGGCGGCAGGGGCCGAGGCACACCCAATAAACCAAGTCTTGCTGCTCCAGGCACAGGGACGAAGACCACATTCGATGATTAA 2175 0.4487 MAPLTGNENAQHRRAAGTLRALVQTFAYQNPKTQRTLGFFQAFLSPLVSEAPLSILCVSKMGKSSKKSAPKVDSSPAVVPPSKSAKKGKREAEEELEKQVSAKKQKRDEVTEKKNSKVQKNKKESSSDDSSSSDSEEDKKTATKAVLPSKKQPSKNGALSGRLNKGKPASSSSSESSDDESDSDDDVRTKVAPLSKKVPVAAAKKVESDSESESSADEDDVRTKSSKKLSAAPAAGKPTPAKKIESSDDTTSDDSSDEDDDLATKVPAASKKLPATAVPSKKKVESSGSSEDESSESSDEDNGMKSSVKAVSKPSIASKKVESSESSDSDSSSSDEDNKNKKGANTASSIKPAKASEKKSKSKDSSDETDSDDEEDKMDVDEDSSSEESEEEAQKKKSVKVLKESNESSESSDDSDDEKETPSKAQKNAKNVEDVDAASAKSNGKKARSTPATPKVQNGMSKTLFVGNLSFKVEQTDVENFFKDCGEVVEVRLSSDENGRFKGFGHVEFATAEAAQNALELNGEELLQRPVKLDLAREKGAYTPNSGNWSNSFQKGGQAQSHTLFVKGFDTSQGEDEIRTNLKEHFNCGEITRISIPKDYETGAAKGFAYMDFKDANALNKALELNGSELGGGYYLTVDEAKPRGDNQGASGGSQFGGRGGRGGGRSGGRGGGGQFGGRGGGGQFGGRGGRGGRGRGGGGRGRGTPNKPSLAAPGTGTKTTFDD 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1679 724 MobiDBLite consensus disorder prediction 368 388 - -
Lele51g1679 724 SMART rrm1_1 563 639 IPR000504 GO:0003723
Lele51g1679 724 SMART rrm1_1 463 534 IPR000504 GO:0003723
Lele51g1679 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 462 538 IPR000504 GO:0003723
Lele51g1679 724 SUPERFAMILY RNA-binding domain, RBD 554 674 IPR035979 GO:0003676
Lele51g1679 724 SUPERFAMILY RNA-binding domain, RBD 461 582 IPR035979 GO:0003676
Lele51g1679 724 MobiDBLite consensus disorder prediction 389 409 - -
Lele51g1679 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 564 632 IPR000504 GO:0003723
Lele51g1679 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 464 531 IPR000504 GO:0003723
Lele51g1679 724 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 562 690 - -
Lele51g1679 724 Coils Coil 86 113 - -
Lele51g1679 724 MobiDBLite consensus disorder prediction 61 458 - -
Lele51g1679 724 Gene3D - 435 545 IPR012677 -
Lele51g1679 724 Gene3D - 546 651 IPR012677 -
Lele51g1679 724 MobiDBLite consensus disorder prediction 84 145 - -
Lele51g1679 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 562 643 IPR000504 GO:0003723
Lele51g1679 724 MobiDBLite consensus disorder prediction 443 458 - -
Lele51g1679 724 MobiDBLite consensus disorder prediction 417 431 - -
Lele51g1679 724 MobiDBLite consensus disorder prediction 202 226 - -
Lele51g1679 724 MobiDBLite consensus disorder prediction 147 176 - -
Lele51g1679 724 CDD RRM1_NUCLs 463 539 IPR034349 -
Lele51g1679 724 MobiDBLite consensus disorder prediction 642 724 - -
Lele51g1679 724 MobiDBLite consensus disorder prediction 304 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1679 Lele-ChrLele51 17786878 17793194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1679 426 630 Eukaryotic Initiation Factors Gene Family AT4G34110 25.837 1.04e-11 66.2