Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1656 ATGGCCAATGTTGAACAAGATAAGCTTGCAAAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACTTACGAGCTTCTAGTAATGCGGATACTTTATCTGGTGCTGACGGCAGCCGCATTGTTGGTTTGAACTCATATAAGAGCTCTGAAGTAGGGATCCAGTCTGTGGCCCAAGGTGATGCCTCTCAATCATATCATTTTAGTAGAACATCTGAACAAAACAGTGGCATGTTTGGTAGATTCCGCTCTAGGCACAACAGGGCAGCATCACTTAATGAGGAAATTCTGAGTTGCCGTGGCATTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTACGACTTTGCTTTCGCATAATTTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGTTGGACTGGGTAAATAAAATTACTGGAGCTATTACATCACTTTTCAACTCTCAGTTTCTTCAACAGCATAGCCTTGTATCTTTGACTGCAGACATATATTCCAATGAAGTGGAGAGTGTCTCTAAGACTTTATGGGGAATTCCTGGAAATAATAGGTGTGCCGAGTGTAGTGCAACTGAACCAGACTGGGCATCTCTTAACCTTGGGATATTGCTGTGTATTGAATGCTCTGGTGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCTATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTTTGGACTTATTCCGGAACTTGGGTAATGCATATTTTATTCAACTTGGTTTAATGAAAAGAAAACGAAAGCAATTATACTTGGCCCTCTCTGATTCATCCTTGAATGATAATGTGGATAGTGCTTTGACATTGAAACCAGTAAGAAGTGCTATTTTCTGTATCGACGTGGTGATTATAACTAAAGATTGGAATCAGGGCAATATGGAGGCTGTGCTAGGGTTATCAGCTGTGCAGCATGGGATTTCTGCATCTGTATTAAGAAGTTTTAGCTCTGATCCAAAGTATTATGGGAAAAATGAGTCAAATCCGCCAATTAAACCATGCCCCACGGATGCCTTTCAAGAGAAGGAAAAGTTCATCCATGCGAAGTACGTGGAGAAGTCACTAATCAATAAAGAGACTGTACCCGGGAACCCTTCTCCTGCCTTGAGAATCTGGCAGGCAGTTCAGGCTTTGAACATACAAGAAGTGTATCGCCTCATTGTCACTTCAGATGCAATTCTGGTAAACACCAAAGATGATGATGTGGTTCCCCATGCTGAGGCAGAAAATTTGGATTTAATCTGTAGCACAACTGAAATAGAGCAAGATCCTGATAATCCAGTGAGCTGTCTCCAAGGTTGTTCGCTGTTGCATCTGGCATGTCATTCTGACAGTGAACTAATGGTTGAGTTGTTGCTTCAATTTGGTGCGGATGTAAATGTGCGTGACTCCCATGGAAAGACTCCATTGCACTATTGCATTTCTAGAGGAAAAAATCCTTTGGCAAAGCTTTTACTTCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGATTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTCGCTGAATCCGCTTAA 1638 0.4164 MANVEQDKLAKRIQEYRTQAELDNLRASSNADTLSGADGSRIVGLNSYKSSEVGIQSVAQGDASQSYHFSRTSEQNSGMFGRFRSRHNRAASLNEEILSCRGIDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRLDWVNKITGAITSLFNSQFLQQHSLVSLTADIYSNEVESVSKTLWGIPGNNRCAECSATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYFIQLGLMKRKRKQLYLALSDSSLNDNVDSALTLKPVRSAIFCIDVVIITKDWNQGNMEAVLGLSAVQHGISASVLRSFSSDPKYYGKNESNPPIKPCPTDAFQEKEKFIHAKYVEKSLINKETVPGNPSPALRIWQAVQALNIQEVYRLIVTSDAILVNTKDDDVVPHAEAENLDLICSTTEIEQDPDNPVSCLQGCSLLHLACHSDSELMVELLLQFGADVNVRDSHGKTPLHYCISRGKNPLAKLLLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1656 545 Pfam Ankyrin repeats (3 copies) 442 516 IPR002110 GO:0005515
Lele51g1656 545 PANTHER CENTAURIN/ARF 2 543 IPR045258 GO:0005096
Lele51g1656 545 CDD ArfGap 186 256 - -
Lele51g1656 545 Gene3D Arf GTPase activating protein 169 381 IPR038508 -
Lele51g1656 545 SUPERFAMILY Ankyrin repeat 437 532 IPR036770 -
Lele51g1656 545 SMART PH_update 47 156 IPR001849 -
Lele51g1656 545 SMART ANK_2a 452 481 IPR002110 GO:0005515
Lele51g1656 545 SMART ANK_2a 485 514 IPR002110 GO:0005515
Lele51g1656 545 SUPERFAMILY ArfGap/RecO-like zinc finger 180 260 IPR037278 -
Lele51g1656 545 Pfam Putative GTPase activating protein for Arf 182 263 IPR001164 GO:0005096
Lele51g1656 545 SUPERFAMILY PH domain-like 102 168 - -
Lele51g1656 545 ProSiteProfiles Ankyrin repeat region circular profile. 485 516 - -
Lele51g1656 545 ProSiteProfiles Ankyrin repeat profile. 485 517 IPR002110 GO:0005515
Lele51g1656 545 ProSiteProfiles PH domain profile. 120 154 IPR001849 -
Lele51g1656 545 ProSiteProfiles ARF GTPase-activating proteins domain profile. 180 255 IPR001164 GO:0005096
Lele51g1656 545 PRINTS HIV Rev interacting protein signature 192 211 IPR001164 GO:0005096
Lele51g1656 545 PRINTS HIV Rev interacting protein signature 234 255 IPR001164 GO:0005096
Lele51g1656 545 PRINTS HIV Rev interacting protein signature 211 228 IPR001164 GO:0005096
Lele51g1656 545 Gene3D - 385 541 IPR036770 -
Lele51g1656 545 ProSiteProfiles Ankyrin repeat profile. 452 484 IPR002110 GO:0005515
Lele51g1656 545 Gene3D - 81 161 IPR011993 -
Lele51g1656 545 ProSiteProfiles Ankyrin repeat region circular profile. 452 483 - -
Lele51g1656 545 SMART arf_gap_3 180 298 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1656 Lele-ChrLele51 17549704 17554653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1656 190 254 C2H2 Transcription Factor Family AT3G07940 53.846 2.93e-17 80.5