Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1652 ATGGCGGCATCTTCTTCGTCGGCGGCGTCGCTGTTCGGAATCAGAGGAGATCAGAATCCGATGAATCAGCAGCAGCATTCATCAACTCCAACTTCGTCAACGACCGCAGCTGCACCACCGCAGAAAAAGAAGAGAAACCAACCAGGAAAACCAAATCCAGATGCAGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACCTACAACTTCACAGAAGAGGACACAACCTGCCTTGGAAACTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTCTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCTCTCGGTGACCTCACTGGCATCAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGGTGCGACTGTGGAACTCTCTTCTCCAGGCGAGACAGTTTTATCACGCACAGGGCTTTTTGTGATGCACTGGCTCAAGAAAGTGCGAGGCAGCCTTCCAACTTGATTAATGGGAGCCAGCTCTATGGAAGTAACAATGTCGCTTTAGGCTTATCTCAGGTGGCCTCCCACATCTCCGCCGTCCATGACCATAACCCCAACAATCAAACCGGGGGCGACATTTTGCGAGCCGCCGCGGCTTCTCGGGCTGCCGGCCATTTCGACCACCTTCTCCCACCATCCTTAATCAGACCACCACCACCGCAGCAGGTGGCGCCCAATGTTGCTTCTCCTCCGCCCTTCTTCATGCCGGAGAACTATCACCACCATGATCATCATCAGCAAAACAAACAATTCCATGGACTCGTGCAATTCTCTGATCTTCATCACAACAATAGTAACAATTCTCCAACATCTGCTCCTAATAACAGCACCAACCTCTTCAACCTTCCCGCATTCCTCTCCAACACCGCCAATAATAACAGTTCTTTATCCGATCACTTGGGCAACAACGGAAGCGCCGCCGTGGACGGCCATAACAACTTCTTCTCCGACCAAATCACAAGCTCCAGTGCTCCTTCTCTTTTCAGCACATCTCTTCAGAACAACAGCAACAGCAGTGGCATCCCTCACATGTCTGCAACAGCACTGCTTCAAAAGGCGGCTCAAATCGGTGCAAGTTCTAGCAACAACAGCACCACCGCCTCGCTTCTCAGAAGCTTCGGAAGCTCCTCCTCCACCATCACCGGATCCAAGTCTGATCATCACCACCACAACAGGCCGCCACCACAGCAGCTGGTCGGAGCAAACTATGGCGATATTTTCGGAGGGTCCTTGTCGACCAACAACGACGATCAGAACAGTAACCTTCAAGATCTGATGAACACATTCAGTACTGTTGGTGGGTATGAAGGATACGATCATCATCATCAACAAAACAACTCGAACACAAGAGAACTGAAACTGCCCGCAGGATCTGACAGGCTCACTAGAGATTTTCTTGGGGTTGGGCAGATTGTGAGGAGCATGAGCGGAGGGATTTCACCCAGAGATCATTATCATCATCAGCAGCAAGGGTTCATGAACTTGGGTTCTTTGGAGAATCACAGAAACAATAATAATAATAATAATGCTGGGGAAAACCGAAGTACCAAGGGATGGATATATGTCATGAAGATGTTGGGTTACATTGAAGGTTGA 1761 0.4918 MAASSSSAASLFGIRGDQNPMNQQQHSSTPTSSTTAAAPPQKKKRNQPGKPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSNLINGSQLYGSNNVALGLSQVASHISAVHDHNPNNQTGGDILRAAAASRAAGHFDHLLPPSLIRPPPPQQVAPNVASPPPFFMPENYHHHDHHQQNKQFHGLVQFSDLHHNNSNNSPTSAPNNSTNLFNLPAFLSNTANNNSSLSDHLGNNGSAAVDGHNNFFSDQITSSSAPSLFSTSLQNNSNSSGIPHMSATALLQKAAQIGASSSNNSTTASLLRSFGSSSSTITGSKSDHHHHNRPPPQQLVGANYGDIFGGSLSTNNDDQNSNLQDLMNTFSTVGGYEGYDHHHQQNNSNTRELKLPAGSDRLTRDFLGVGQIVRSMSGGISPRDHYHHQQQGFMNLGSLENHRNNNNNNNAGENRSTKGWIYVMKMLGYIEG 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1652 586 FunFam protein indeterminate-domain 12-like 50 118 - -
Lele51g1652 586 MobiDBLite consensus disorder prediction 415 437 - -
Lele51g1652 586 Gene3D Classic Zinc Finger 52 119 - -
Lele51g1652 586 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lele51g1652 586 MobiDBLite consensus disorder prediction 415 456 - -
Lele51g1652 586 Gene3D Classic Zinc Finger 125 204 - -
Lele51g1652 586 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lele51g1652 586 MobiDBLite consensus disorder prediction 1 56 - -
Lele51g1652 586 SMART c2h2final6 147 167 IPR013087 -
Lele51g1652 586 SMART c2h2final6 112 142 IPR013087 -
Lele51g1652 586 SMART c2h2final6 71 93 IPR013087 -
Lele51g1652 586 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Lele51g1652 586 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 543 IPR031140 -
Lele51g1652 586 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Lele51g1652 586 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Lele51g1652 586 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1652 Lele-ChrLele51 17512114 17516776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1652 41 532 IDZ Gene Family AT2G02070 48.282 5.43e-134 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele51g1652 zf-C2H2_jaz 3.6e-05 CL0361