Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1625 ATGAAGGGCCACGAGAGGCCATTGACGTTTCTCAAGTACAACAGAGATGGAGATCTTCTTTTCTCTTGTGCTAAGGACCACAACCCCACCGTCTGGTTCGCCGACAACGGCGAACGCTTGGGCACTTATCGTGGACACAACGGTGCTGTTTGGTGCTGCGATGTAATCGTGGATTTTATTAACAATACCTATCACTATGCAGGAGATTCAATGCGGCTTATAACGGGCAGTGCGGATCAGACGGCGAAGCTATGGAACGTTCAAACTGGGCAGCAGTTGTTCACGTTCAATTTTGATTCTCCTGCTAGGTCTGTGGATTTCGCTGTGGGCGACAAACTTGCTGTTATGACAACTGATCCCTTCATGGAATTGCCTTCGGCAATTCATGTCAAACGCATTGCTAGAGACGCCAGTGAGCAGACTGGCGAATCCATACTTGTTATCAAAGGCCCTCAGGGAAGAATAAATAGAGCCATTTGGGGGCCACTAAACAAAACCATTATTAGTGCTGGAGAAGATTCAGTGATCCGTTTATGGGATTCTGAGACAGGAAAGCTACTTAAGGAGGTAGACAAGGAATCTGGCCACAAAAAGACAATAACATCTCTTGCAAAATCTGCAGATGGTTCCCATTTCCTTACTGGCTCTCTTGATAAATCGGCTAAGCTTTGGGATGCCAGATCATTGTCTCTTATCAAGACATATGTAACAGAACGCCCAGTCAATGCAGTGGCCATGTCACCTCTTCTTGACCATGTGGTGCTTGGAGGTGGTCAAGACGCATCAGCTGTTACTACTACTGATCATCGTGCTGGAAAATTTGAAGCCAAGTTTTTTGACAAGATTCTCCAAGAAGAAATTGGGGGTGTGAAGGGACATTTTGGACCAATTAATGCACTTGCCTTTAATCCTGATGGCAAGAGCTTTTCAAGTGGAGGTGAAGATGGTTATGTAAGGTTGCATCACTTTGACCCAGATTACTTCAATATTAAGATTTAG 999 0.4515 MKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVIVDFINNTYHYAGDSMRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDKLAVMTTDPFMELPSAIHVKRIARDASEQTGESILVIKGPQGRINRAIWGPLNKTIISAGEDSVIRLWDSETGKLLKEVDKESGHKKTITSLAKSADGSHFLTGSLDKSAKLWDARSLSLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1625 332 Pfam WD domain, G-beta repeat 194 225 IPR001680 GO:0005515
Lele51g1625 332 Pfam WD domain, G-beta repeat 289 320 IPR001680 GO:0005515
Lele51g1625 332 Pfam WD domain, G-beta repeat 38 86 IPR001680 GO:0005515
Lele51g1625 332 Gene3D - 1 332 IPR015943 GO:0005515
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 234 IPR001680 GO:0005515
Lele51g1625 332 CDD WD40 2 320 - -
Lele51g1625 332 ProSitePatterns Trp-Asp (WD) repeats signature. 167 181 IPR019775 -
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 148 185 - -
Lele51g1625 332 PRINTS G protein beta WD-40 repeat signature 167 181 IPR020472 -
Lele51g1625 332 PRINTS G protein beta WD-40 repeat signature 73 87 IPR020472 -
Lele51g1625 332 PRINTS G protein beta WD-40 repeat signature 212 226 IPR020472 -
Lele51g1625 332 SUPERFAMILY WD40 repeat-like 2 320 IPR036322 GO:0005515
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 228 - -
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 42 IPR001680 GO:0005515
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 320 IPR001680 GO:0005515
Lele51g1625 332 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 331 - -
Lele51g1625 332 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 332 IPR027525 GO:0003743|GO:0005737|GO:0005852
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 320 - -
Lele51g1625 332 SMART WD40_4 183 225 IPR001680 GO:0005515
Lele51g1625 332 SMART WD40_4 283 322 IPR001680 GO:0005515
Lele51g1625 332 SMART WD40_4 36 86 IPR001680 GO:0005515
Lele51g1625 332 SMART WD40_4 1 33 IPR001680 GO:0005515
Lele51g1625 332 SMART WD40_4 228 267 IPR001680 GO:0005515
Lele51g1625 332 SMART WD40_4 141 180 IPR001680 GO:0005515
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 66 95 IPR001680 GO:0005515
Lele51g1625 332 ProSiteProfiles Trp-Asp (WD) repeats profile. 148 189 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1625 Lele-ChrLele51 17261683 17264541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1625 1 332 Eukaryotic Initiation Factors Gene Family AT2G46290 76.048 0.0 533