Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1624 ATGAGGATGGGAATAAGAGAAGGAGAGATGATAAGGGGTTTGGCTACTTGGTTGGTGGCCCCCAACTTTCCAAACCCATCATCTTCAATTCTGCTATGCTCACAGGGGCTAGCCTATTTGCTTCGCTTGACTTTTCGCAACAACAACATGTCTGCTGCTTCCTCGTCTTCACCGTTCTTCGGAATCAGAGAAGAAAACCCAACTCATCCAGTGCCACAACAGCAACATCAACAACAACATCATCAATCCTCCACAGCTGCTTCCTCGACTGCTCCAAACACTGTAGTCCCTCAAAAGAAACGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACTTGCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGTGTTCATCATGACCCTTCAAGAGCTCTCGGTGACCTCACTGGAATTAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGATGCGACTGTGGAACTCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTCTGCGATGCCCTAGCTCAGGAGAGTGTGAGGAACCCTACAAGCTTAAACTCTATGGCCACTCATCTTTACGGCACAAATCACCATATGAGCTTAGGCCTATCTCATCATCAGCAACTTGGTTCTTCAATGACCCACCATCTTCATCATCCTCAAAACCTACACGCTTCGTCTGCAACAACAAACCCTAATTCCAGTCTCCTGAGTCTAGGCAATGCCAATAATAATGCAGCAAAATTTGAGCCTTCCAGCTTGATCTCACCATCATCATCGAACCCATCAATGCCTAATCATTCCTCAGCTTTCTTCATGACAGATCCGATCCCTAACCAAGGATTTCATCAGCACCAGCAAGCAGCGGCATTTTCGGCTTCAAACAAGGCTTCGTCTTTACATGGTCTCATGCAGCTTCCTGATCTCCATGGAAACCCTAGTAATAATCTAGGGTTCTTCGCTAATAACAGCATGATCACTGATCAGTTCAATAACGTCCCTATTGGTGATCATCAGTCTGGCTTGCTTTTCAGTAACTCCATGCAACACGCTGATGACGTCCCTCCTGCGGCCGCGCATATGTCTGCTACTGCATTGCTTCAGAAAGCTGCTCAGATGGGCTCGACCACGACCACGTCGAATAATAGTTCTTCCTCGTTACTCAGAGGAATGGGTGGTGGTTCATCAGCAAACAATAATAATGGCGCTAAATCCGATAATCTTGTCGCTCTTGGGAGTGACAGTACAGAAAACGACCACCACCACCATCATCTTCGAGGGTTGATGAATTCTCTTGTTAATGGGAATGCTTCGATATTTGGAAATGTGCAAGCAGGGAACGATCATCATCATCGTCAGGCTAATAGTCTGCAACAGAATCTGGGAACTGTGAGCTTTGGAGGTTCTGATAAGTTAACGTTAGACTTTTTAGGTGTCGGAGGAATGGTGAGAAACATGAATGGTGGATTTTTACAGAGAGAACAACCTCAACAACAACAACAGGTGCAACATGGAAGCTTCAACATGAGTTCTTTGGAACCTGAACAACAGGCAAGCCAAACTTTCAGAAGCACGACGCTGCAATGA 1830 0.459 MRMGIREGEMIRGLATWLVAPNFPNPSSSILLCSQGLAYLLRLTFRNNNMSAASSSSPFFGIREENPTHPVPQQQHQQQHHQSSTAASSTAPNTVVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVRNPTSLNSMATHLYGTNHHMSLGLSHHQQLGSSMTHHLHHPQNLHASSATTNPNSSLLSLGNANNNAAKFEPSSLISPSSSNPSMPNHSSAFFMTDPIPNQGFHQHQQAAAFSASNKASSLHGLMQLPDLHGNPSNNLGFFANNSMITDQFNNVPIGDHQSGLLFSNSMQHADDVPPAAAHMSATALLQKAAQMGSTTTTSNNSSSSLLRGMGGGSSANNNNGAKSDNLVALGSDSTENDHHHHHLRGLMNSLVNGNASIFGNVQAGNDHHHRQANSLQQNLGTVSFGGSDKLTLDFLGVGGMVRNMNGGFLQREQPQQQQQVQHGSFNMSSLEPEQQASQTFRSTTLQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1624 609 MobiDBLite consensus disorder prediction 295 322 - -
Lele51g1624 609 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 74 581 IPR031140 -
Lele51g1624 609 MobiDBLite consensus disorder prediction 451 495 - -
Lele51g1624 609 Gene3D Classic Zinc Finger 182 261 - -
Lele51g1624 609 FunFam protein indeterminate-domain 12-like 107 175 - -
Lele51g1624 609 MobiDBLite consensus disorder prediction 54 113 - -
Lele51g1624 609 FunFam protein indeterminate-domain 5, chloroplastic-like 182 261 - -
Lele51g1624 609 Pfam Zinc-finger double-stranded RNA-binding 128 150 IPR022755 -
Lele51g1624 609 SMART c2h2final6 204 224 IPR013087 -
Lele51g1624 609 SMART c2h2final6 128 150 IPR013087 -
Lele51g1624 609 SMART c2h2final6 169 199 IPR013087 -
Lele51g1624 609 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Lele51g1624 609 MobiDBLite consensus disorder prediction 54 105 - -
Lele51g1624 609 Gene3D Classic Zinc Finger 106 176 - -
Lele51g1624 609 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 150 IPR013087 -
Lele51g1624 609 MobiDBLite consensus disorder prediction 451 503 - -
Lele51g1624 609 SUPERFAMILY beta-beta-alpha zinc fingers 127 224 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1624 Lele-ChrLele51 17249519 17254627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1624 123 568 C2H2 Transcription Factor Family AT2G02080 50.106 9.91e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele51g1624 zf-C2H2_jaz 3.8e-05 CL0361