Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1606 ATGGCGGCGGGTGGAAAACTCTTTGGGGCACCCAACATGACGACACTCTTGCTTCAAAACGAAATACTTCCTCCTTCTTCTGATGTTCTCGACTCTCTCTGGGCTCACACCTCAAACCCAGCTTTCCCAGGATCAAAATCGATGGTGAATTTTGAGAGACTGAGTGGATGCAGAGTGACAGACCGGCCATTTCTGCAAGGATTGGATAAAGAAGAGACAGGGGAAGAAGATTACGAGATGTGCTTTCATCAAGCTGGGAAGAAGAGGAGGCTCGCAAGCGAGCAAGTTCAGTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTAGAGCCAGAGAGGAAGGTTCAGCTAGCAAAGGAGCTTGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAGAACAGAAGAGCAAGGTTCAAGACCAAACAGCTTGAGCAAGACTATGGCAAATTAAAAGCTAGCTATGATAAACTCAAGAGTGATCATGACAATCTTATCAAGGAGAACGACAAGTTAAAAGAAGAGGTGAAATCCATGAAAAACAGATTGAATGTGAGAGAGAAAGAGAAAGAAGATTCTCACAAGTCAGAGGCCAATGCAGATCCTGGAGAATCAGCAGCAGTGAATTCGGCAGAAGGAAAGCCACAGGAAGATGGAATCAAAGACGAAGGAGTAACGGCGAAGGGAATAACTCTGTGGAATAAGCAGCAGGAAGACGTGAATTCATCAGTGAAAAGCGACGTGGTGGATTCGGAGGACACGGAGGCGAACCACCATTCGTGGATGCAACAAGAGCCGGCGGATTCGTCACCGGCGGCGGAAGCTGAAGCTGCGGAACACTCGGATTTCTCGCAGGACGAAGAAGACGATAACCTAATGAGGAGCAACCTGCTGAATCTGGCATGCTTCCCCAAGGTTGAAGAAGATGGATGCTACGATGATCCTCCTGAAGGTGGTTGTAACAATTTTGGATTCCCTGTTGAAGATCAAACCTTCTGTTTTTGGCCTTACTGA 1014 0.4753 MAAGGKLFGAPNMTTLLLQNEILPPSSDVLDSLWAHTSNPAFPGSKSMVNFERLSGCRVTDRPFLQGLDKEETGEEDYEMCFHQAGKKRRLASEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQDYGKLKASYDKLKSDHDNLIKENDKLKEEVKSMKNRLNVREKEKEDSHKSEANADPGESAAVNSAEGKPQEDGIKDEGVTAKGITLWNKQQEDVNSSVKSDVVDSEDTEANHHSWMQQEPADSSPAAEAEAAEHSDFSQDEEDDNLMRSNLLNLACFPKVEEDGCYDDPPEGGCNNFGFPVEDQTFCFWPY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1606 337 MobiDBLite consensus disorder prediction 178 291 - -
Lele51g1606 337 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
Lele51g1606 337 MobiDBLite consensus disorder prediction 245 259 - -
Lele51g1606 337 Coils Coil 141 189 - -
Lele51g1606 337 FunFam homeobox-leucine zipper protein ATHB-6-like 90 136 - -
Lele51g1606 337 Gene3D - 81 148 - -
Lele51g1606 337 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Lele51g1606 337 CDD homeodomain 87 143 IPR001356 GO:0003677
Lele51g1606 337 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Lele51g1606 337 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Lele51g1606 337 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Lele51g1606 337 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Lele51g1606 337 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Lele51g1606 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 258 IPR045224 GO:0003700
Lele51g1606 337 SMART HOX_1 85 146 IPR001356 GO:0003677
Lele51g1606 337 MobiDBLite consensus disorder prediction 230 244 - -
Lele51g1606 337 MobiDBLite consensus disorder prediction 178 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1606 Lele-ChrLele51 16842661 16844406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1606 44 204 Homeobox Transcription Factor Family AT3G01470 50.311 1.55e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele51g1606 Homeodomain 1.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1607 49 17858131 17859864 Lele51g1606 51 16842661 16844406 hybridization
Lele50g1277 50 10587809 10589450 Lele51g1606 51 16842661 16844406 hybridization