Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1531 ATGAATTTTCTAACTGAGCTTATTGCTACCAGCCACTCTGGTTGTGAGAATATTGATACATGCAAGTCTTCCCCAATAACATCTCCCACATATATATTGATTCACATACCTAAAAGGATCAGAACTCATTTTTATGTAATTTCTTCCAAAACTAGCAAAATGGATCTGCAAAATGTGCAAAACCAAAGCATGCATTTGGTTCTTTCCTCTGATGCCAAGCCAAGGCTTAAATGGACTCCTGAGCTTCATCAACGATTCCTTGATGCTGTTAATCAGCTTGGAGGGCCTGAAAAGGCAACCCCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTTACCTTGTACCACCTGAAGAGCCATTTACAGGCATTTCCTCCTTTTATAAAGATTAAATTCAGACTTGGGAAAAATCCTCAACCAGAAGCCTTCTATGATGATGATAAACAAGATTATAGAGAAGCCCAAAGCAGTGATGGTCACTGCATTAGGGAAACCACTGTGGGGACCCAGAATCAGATCACTGAAAGCCAGCAGATTGCTCAAGCTCTCCAACTACAAATGGAAGTGCAGAAGAAGCTTTATGAACAAATTGAGGTGCAGAGACATTTGCAGCTTCGGATCGAAGCTCAAGGGAAGTACTTACAATCAGTGCTGTTAAAAGCTCAGGAAGCACTTGCAGGGAACAATCCTTCTGGCGCTGGTATAGAACATGCAAAAGCTGAGCTCTCTCAATTAGTCTCAATAATCAACAATGGCTGCCCAAGTTCGCCCATCTCAGAACTGACAGAAACTGGAGTTTTGAGCTTGAAAGATGGAGGAGAGAGGAAGCAAAGCAGAGGGACTATGTGTTCATTGGAGAGTTCCTTGACATCTTCTGAAAGCTCAGGTACAAAGGAGGAAGAGGACCCTCATAACTCTAACAGAACTTCAGTTGAACTGCAGTTGATGACTGTTCACCATGAAGAAGATGATAAAGAATTGAATGGTGACTCAAAGAATCAAGCCTGTGGGAGAAAAAGGAGTGGAACCACTGATTCTGATGGTTACTGTGTAGAGCAACCAATCAGTAAAAGATGCAGCAACCGGTCCAGGAAACCTGAGTCGTCTGAATTGCTTGATTTGAACAGCCAGTATCGCAGTGACACTGACTCAGACTAA 1161 0.4272 MNFLTELIATSHSGCENIDTCKSSPITSPTYILIHIPKRIRTHFYVISSKTSKMDLQNVQNQSMHLVLSSDAKPRLKWTPELHQRFLDAVNQLGGPEKATPKSLMRVMGIPGLTLYHLKSHLQAFPPFIKIKFRLGKNPQPEAFYDDDKQDYREAQSSDGHCIRETTVGTQNQITESQQIAQALQLQMEVQKKLYEQIEVQRHLQLRIEAQGKYLQSVLLKAQEALAGNNPSGAGIEHAKAELSQLVSIINNGCPSSPISELTETGVLSLKDGGERKQSRGTMCSLESSLTSSESSGTKEEEDPHNSNRTSVELQLMTVHHEEDDKELNGDSKNQACGRKRSGTTDSDGYCVEQPISKRCSNRSRKPESSELLDLNSQYRSDTDSD 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1531 386 Coils Coil 181 201 - -
Lele51g1531 386 MobiDBLite consensus disorder prediction 335 351 - -
Lele51g1531 386 MobiDBLite consensus disorder prediction 270 309 - -
Lele51g1531 386 Pfam Myb-like DNA-binding domain 75 123 IPR001005 -
Lele51g1531 386 Pfam MYB-CC type transfactor, LHEQLE motif 179 224 IPR025756 -
Lele51g1531 386 SUPERFAMILY Homeodomain-like 72 129 IPR009057 -
Lele51g1531 386 Gene3D - 72 137 - -
Lele51g1531 386 MobiDBLite consensus disorder prediction 322 386 - -
Lele51g1531 386 MobiDBLite consensus disorder prediction 281 295 - -
Lele51g1531 386 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 73 125 IPR006447 GO:0003677
Lele51g1531 386 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 47 325 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1531 Lele-ChrLele51 13619370 13621893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1531 64 359 G2-like Transcription Factor Family AT1G69580 50.482 1.72e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele51g1531 Myb_DNA-binding 2.7e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1535 49 12549840 12551764 Lele51g1531 51 13619370 13621893 hybridization