Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1519 ATGATCGTGGAAGAGAAGAAGCCACACAGAGCGATGGCCGAAGAAGGGTATATGCAACAGCTTAGATCTAAAGCCACAGAGCTTCTCCTGAGAGAAGATTGGAAGGAATCCATCGATGCCTATTCAAACTTCATCACTCTCTGCCAAAACCAATTCTTTCAAACCCCAAACCATTCTGACTCAGATCAGCTTCAAAGGCTGAGAAGATCCCTCTGCTTGGCCTTTTCAAACAGAGCCGAAGCAAGATTAAGATTGAAAGAGTTTCATTCTGCGTTGGAAGATTGTGATTTAGCTTTGGAAATCGATGGGATCCATTTGAAGACTCTGATCTGCAAAGGTAAGATTTTGCTGAATCTCAATATGTATTCCATGTCTTTGGATTGTTTTAGAGTCGCTCTTCTTGATCCCCAGGCTAATGGGAACTCTGAAAACCTAAATGGGTATGTCGAGAAATGTCACAAACTCGACTGTATCTCCAGAACTGGAAATCTGGACCTTTCCGATTGGGTTTCAAATGGGTTACGGGGAAAGTCTCCAGAACTTGCAGAGTACATTGGTTCTGTGGAGATCATGGAATCTGAGATCAGTGGACGAGGGTTGTTTGCAACTAAGAACATCGATGCAGGGGGATTAGTTTTGATCACAAAGGCAATAGCAATGGAAAGAAGTGTATTGGGAGGGAAAGATCTGAGTGAGGAAGCTCAATTAGTGATGTGGAAGAATTTCATCGATAAAGTTGCAGACTTTGTTAGAAAATGTCACAGAACAAGCAATTTGATCAGCAAATTGTCAAGTGGGGAAGATGAAGATTCACTTGAGGTTCCTGATATAGCTCTGTTTAAACCAGGAACAGAGACGAAGAACAAGAACAAGAACAATCAAGCCCGTGAGAGTGAGAAGATTGATATGGGTAAGTTACTAGCCATATTGGATGTGAATTCTCTAACTGAAGATGCAGTTTCAGCCAATGTATTAGGGAAGAAGAAGCACAATGATTATTATGGTGTTGGGCTATGGCTATTACCTTCCTTCATCAACCATTCATGCTTACCAAATGCAAGGAGATTACATGTGGGAGACTATCTAATAGTTCATGCTTCTAAAGATATCAAAGCAGGTGAAGAAATTATCTTTGCCTATTTGGATCCACTTTCTTCATTGCAAAGTCGCAAAGATATGTCCACAACATGGGGAATCCAATGTAGTTGTAAGAGATGCAAGTTTGAGTCAGAAATCATGAGCAAACAAGAGATGAGAGAAATTGAGATTGGTCTCGAAAGAGGGATGGATGTGGGAAGTGCAGTGTACAAATTAGAAGAAGAAATGAAGAGATTGAAAGTGAGAGGGAAAGAGAAAGCCTATTTGAGGGCATCATTTTGGTCTGCATATTCTGAGGTTTATAGGTCTGATAGGTTCATGAAGAGGTGGGGAAGGCGGATTCCGGCCATGGAAGCCGTCGTTTATAGCATCATCGATGTTATTGGAGGAGATGAGAGGCTGCTTAAGATTCAAATGGAGGAGATGAAGAAAAATGGAGGTGGTAGATTTGTGGAGATGGAGAAAGCTTTGAAGCTGGCAAGAGAAGTTTATGGGAAGGTGGTGAAGAAGCAGGCCATGAGGACTCTTATTGAGCTTTGTGTTGCAACTAATGAATGA 1656 0.4155 MIVEEKKPHRAMAEEGYMQQLRSKATELLLREDWKESIDAYSNFITLCQNQFFQTPNHSDSDQLQRLRRSLCLAFSNRAEARLRLKEFHSALEDCDLALEIDGIHLKTLICKGKILLNLNMYSMSLDCFRVALLDPQANGNSENLNGYVEKCHKLDCISRTGNLDLSDWVSNGLRGKSPELAEYIGSVEIMESEISGRGLFATKNIDAGGLVLITKAIAMERSVLGGKDLSEEAQLVMWKNFIDKVADFVRKCHRTSNLISKLSSGEDEDSLEVPDIALFKPGTETKNKNKNNQARESEKIDMGKLLAILDVNSLTEDAVSANVLGKKKHNDYYGVGLWLLPSFINHSCLPNARRLHVGDYLIVHASKDIKAGEEIIFAYLDPLSSLQSRKDMSTTWGIQCSCKRCKFESEIMSKQEMREIEIGLERGMDVGSAVYKLEEEMKRLKVRGKEKAYLRASFWSAYSEVYRSDRFMKRWGRRIPAMEAVVYSIIDVIGGDERLLKIQMEEMKKNGGGRFVEMEKALKLAREVYGKVVKKQAMRTLIELCVATNE 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1519 551 SMART set_7 186 387 IPR001214 GO:0005515
Lele51g1519 551 CDD SET_SMYD 319 406 - -
Lele51g1519 551 SUPERFAMILY TPR-like 19 134 IPR011990 GO:0005515
Lele51g1519 551 Gene3D SET domain 284 411 IPR046341 -
Lele51g1519 551 SUPERFAMILY SET domain 187 407 IPR046341 -
Lele51g1519 551 ProSiteProfiles SET domain profile. 186 381 IPR001214 GO:0005515
Lele51g1519 551 Pfam SET domain 197 380 IPR001214 GO:0005515
Lele51g1519 551 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 14 545 - -
Lele51g1519 551 Gene3D Tetratricopeptide repeat domain 13 155 IPR011990 GO:0005515
Lele51g1519 551 SMART tpr_5 18 51 IPR019734 GO:0005515
Lele51g1519 551 SMART tpr_5 106 138 IPR019734 GO:0005515
Lele51g1519 551 SMART tpr_5 72 105 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1519 Lele-ChrLele51 11635923 11637578 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele51g1519 SET 9.8e-14 No_clan