Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1514 ATGGTAATGTGTAGGTCATCAAGCTGTGAGAAGAAGGTGGGGTTGAAGAAAGGACCATGGACTCCTGAAGAAGACCACAAGCTCGTCGCTTACATTCAGCAACATGGCCATGGAAGCTGGCGTGCTTTGCCTTTCAAAGCTGGGCTTGAGAGATGTGGGAGGAGTTGCAGACTAAGGTGGACGAATTACCTAAGACCTGATATCAAACGAGGAAAGTTTAGCTTGCAAGAAGAGAGAACCATTATTCAACTTCATGCTTTTCTGGGAAACAGGTCTGCTGTTACTCTTCTTCTTCTTCTTCTTCTTCTTCCATATTTTAAATTTATGCTAAGCTCATCATCAGGCATTGTTTTCTGTTTTTTTGGTCCTAATTTCTCTACCATAGCAGCTCACTTGCCTAAGAGAACAGACAATGAGATCAAGAACTACTGGAACACTCATCTCAAGAAGAGGCTCGCTAGAATGGGAATCGACCCGGCCACACACCGTCCGAAAGTTGACGCCGGCAGAGGCTCGGCTACCTCCAGCCTTAGTCACGTGGCTCAGTGGGAAAGTGCCCGGCTTGAAGCCGAAGCCAGGCTGGTTTTGAAAGTACAAACTCAGAACTATGGTGAGCCAGAGTACAATTGA 630 0.4651 MVMCRSSSCEKKVGLKKGPWTPEEDHKLVAYIQQHGHGSWRALPFKAGLERCGRSCRLRWTNYLRPDIKRGKFSLQEERTIIQLHAFLGNRSAVTLLLLLLLLPYFKFMLSSSSGIVFCFFGPNFSTIAAHLPKRTDNEIKNYWNTHLKKRLARMGIDPATHRPKVDAGRGSATSSLSHVAQWESARLEAEARLVLKVQTQNYGEPEYN 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1514 209 CDD SANT 19 64 IPR001005 -
Lele51g1514 209 ProSiteProfiles Myb-like domain profile. 65 148 IPR001005 -
Lele51g1514 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 152 IPR017930 -
Lele51g1514 209 SUPERFAMILY Homeodomain-like 17 149 IPR009057 -
Lele51g1514 209 FunFam MYB-related transcription factor 16 69 - -
Lele51g1514 209 SMART sant 69 150 IPR001005 -
Lele51g1514 209 SMART sant 16 66 IPR001005 -
Lele51g1514 209 CDD SANT 124 148 IPR001005 -
Lele51g1514 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Lele51g1514 209 Gene3D - 72 152 - -
Lele51g1514 209 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Lele51g1514 209 Pfam Myb-like DNA-binding domain 70 148 IPR001005 -
Lele51g1514 209 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Lele51g1514 209 Gene3D - 16 69 - -
Lele51g1514 209 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1514 Lele-ChrLele51 11486466 11488928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1514 3 195 MYB Transcription Factor Family AT5G15310 62.626 8.40e-82 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele51g1514 Myb_DNA-binding 1.4e-08 CL0123