LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g1503	ATGGTGAAACTGAGGAAACAGTACAGTGAAGAAGAAATGAAACACAAGAGCAGTACTGAAGAAGGAGAAATTGAATGGCAAGAAGCAGCGGCCATGGCTGCGAGTCTTCTGAAAGCTCGAAGAACAGGAAGAAAGAGATTCATTGGGGTTCGTCAGAGACCTTCAGGAAGATGGGTGGCTGAAATCAAAGACACAATTCAGAACATAAGAGTTTGGTTAGGGACTTATGATTCTGCAGAAGAAGCTGCAAGAGCTTATGATGAAGCTGCTTGCTTGCTTCGTGGAGCCAACACTCGTAGAAACTTCTGGCCTTCTCCTCATCATCAGTATAATAATTCTACAGCAAATCATACTCCAGTTCTTCCCAGAAAGATTGCTAATCTCATCCTTCTTAGGCTCAAAGCTCGAAACCTTGCTTCTTGTAATAATTCTCCTGCAGTTCTCACTCATCATTTTCCCAGTAACCAGACACAAGAAGGAGGAGGAGGAGTAGAACCAGCAAAGACCCACCAGCTTGATTATTTTCTTGATCATGGTGGTGAATTTAAAGGAGAAGGGCTTTCTGGGGAAAGTGAAGGAAAATCAGAAGAAAATGATGAGATGGCTAATCTCATGCTTCTTAGGCTGAATGAAGATTGTGTCTCTAACGATTCTGAAGGATTCAGTCATTTTCCCAGTAACCAAACAGGTTTGCACAACTTTGTAGACGAGTCAGAAAATAGTTTTTTCAGAAACCTAGTCAATGAAGTAGGGTTTAACGAAGAAAATTATGGGAAGAAATTGAAAATGAGTGAGGAAAACAATGAAACTGCTGGGAGGGAAAAAGAGAGTTTTGATGAGGAACCTGAAATGGGGTTTATGGATTTTCAGCTTTTGGATAACGTGGGATCATCGATTTGTGATTCTTCTTCTCCATTTGAGGTAGCAGAAGAGATGATGGGGCCAATAATGGATCATAAGCAAGAAGTATATGAAAATGATGATGATGAAGCATCAATTCTGAGAGAAAGTTTTAGGATGAAATATGAAAGAAAATTCTCAGCTTGTCTTTATACCTACGTTGGTGTTTCTGAGTGCTTGAGGCTGCAATTTGGAGCAGAGAATTTCTGA	1110	0.4036	MVKLRKQYSEEEMKHKSSTEEGEIEWQEAAAMAASLLKARRTGRKRFIGVRQRPSGRWVAEIKDTIQNIRVWLGTYDSAEEAARAYDEAACLLRGANTRRNFWPSPHHQYNNSTANHTPVLPRKIANLILLRLKARNLASCNNSPAVLTHHFPSNQTQEGGGGVEPAKTHQLDYFLDHGGEFKGEGLSGESEGKSEENDEMANLMLLRLNEDCVSNDSEGFSHFPSNQTGLHNFVDESENSFFRNLVNEVGFNEENYGKKLKMSEENNETAGREKESFDEEPEMGFMDFQLLDNVGSSICDSSSPFEVAEEMMGPIMDHKQEVYENDDDEASILRESFRMKYERKFSACLYTYVGVSECLRLQFGAENF	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g1503	369	FunFam	ethylene-responsive transcription factor RAP2-11	45	104	-	-
	Lele51g1503	369	Pfam	AP2 domain	46	95	IPR001471	GO:0003700\|GO:0006355
	Lele51g1503	369	ProSiteProfiles	AP2/ERF domain profile.	46	103	IPR001471	GO:0003700\|GO:0006355
	Lele51g1503	369	Coils	Coil	261	281	-	-
	Lele51g1503	369	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	9	320	-	-
	Lele51g1503	369	SMART	rav1_2	46	109	IPR001471	GO:0003700\|GO:0006355
	Lele51g1503	369	Gene3D	AP2/ERF domain	45	103	IPR036955	GO:0003700\|GO:0006355
	Lele51g1503	369	SUPERFAMILY	DNA-binding domain	46	104	IPR016177	GO:0003677
	Lele51g1503	369	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lele51g1503	369	CDD	AP2	45	102	IPR001471	GO:0003700\|GO:0006355
	Lele51g1503	369	PRINTS	Ethylene responsive element binding protein signature	69	85	IPR001471	GO:0003700\|GO:0006355
	Lele51g1503	369	PRINTS	Ethylene responsive element binding protein signature	47	58	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g1503	Lele-ChrLele51	11173953	11175062	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g1503	44	138	AP2-EREBP Transcription Factor Family	AT5G19790	60.000	3.68e-29	111

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele51g1503		AP2	1.2e-14	CL0081