Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1493 ATGAGCTTGCAAGTCCGACAGGAAAGAAGGGATCGGTCCAGGGTTCCTGCCCAAGGTTCTCGTCAGGAATGGGTTCCAAGAGCATCTGTCGCCCCCACCACCTTGAATTCCCCTCCTTCAAATTATCCAATGGATCAAAATTGTAATGCTGGTTCCTCAAATAATGATGTTGCTCCACCAGCAAATTGGCATAGAAGCAGTCATGGGTCAAGGGGTCACATAAGTCGGCCTATGAATCATAGAAGGGAAAGGGAAAAGGGAAGGAATGAGAATCAGGTGGTGCAACGTGCAAGGGACTCTAATTTGCCTCAATTATTGCCAGAGATCCTGGATAAGCTTATGAAAGGTACTGTAGAATGCATGATTTGCTATGACATTGTCTGTAGATCTGCACCCATCTGGTCTTGCTCAAGCTGCTACTCAATCTTTCACCTGAATTGTGTAAAGAAGTGGACTCGAGCACCTACTTCTGTTGATGTGTCTGCAGAAAAGAATCAAGGATTTAATTGGCGGTGTCCTGGGTGTCAATCTGTACAGCTGACGTCATCAAGGGAGATTAGGTATGTATGCTTTTGTGGAAAGAGGCCAGACCCACCATCTGATCTGTATATCACACCACATTCCTGTGGAGAACCATGTGGGAAGCCTCTCGAGAGGGAGATGTTCGTTAATGGGGGGAGAAGGAGCAAGGAAGATCTTTGCCCTCATGTTTGTGTTTTGCAATGCCATCCACAAGGTGCTCTGATCGGTCCTCCGTTCTTACTTGTGGTCAGCATTGCAAAAAGCTTCTTGAGTGTGGATGTCATAGGTGAGAAGGCGGAGGTTATTCTTTGTGGGGACATGGCTGTGAAGGGTGAAATTGAAGCTGAAGGTGGTGTATTTTCTTGTGGTTCCAATTGTGGGAAGAAGCTTAGCTGTGGTAATCATGTCTGCAATGAGATTTGTCATCCAGGCAACTGTGGGGAGTGTGAATTCTTACGAAGCCAAATTAAGACATGGAGGCATGTCATCCTGGGGATTGTTCACCATGTTTGGTTCTAG 1041 0.463 MSLQVRQERRDRSRVPAQGSRQEWVPRASVAPTTLNSPPSNYPMDQNCNAGSSNNDVAPPANWHRSSHGSRGHISRPMNHRREREKGRNENQVVQRARDSNLPQLLPEILDKLMKGTVECMICYDIVCRSAPIWSCSSCYSIFHLNCVKKWTRAPTSVDVSAEKNQGFNWRCPGCQSVQLTSSREIRYVCFCGKRPDPPSDLYITPHSCGEPCGKPLEREMFVNGGRRSKEDLCPHVCVLQCHPQGALIGPPFLLVVSIAKSFLSVDVIGEKAEVILCGDMAVKGEIEAEGGVFSCGSNCGKKLSCGNHVCNEICHPGNCGECEFLRSQIKTWRHVILGIVHHVWF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1493 346 CDD RING-CH-C4HC3_NFX1 119 176 - -
Lele51g1493 346 CDD NF-X1-zinc-finger 296 324 - -
Lele51g1493 346 MobiDBLite consensus disorder prediction 27 61 - -
Lele51g1493 346 MobiDBLite consensus disorder prediction 1 17 - -
Lele51g1493 346 ProSiteProfiles Zinc finger RING-type profile. 120 176 IPR001841 -
Lele51g1493 346 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 270 332 IPR034078 GO:0003700
Lele51g1493 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 180 IPR013083 -
Lele51g1493 346 MobiDBLite consensus disorder prediction 76 93 - -
Lele51g1493 346 MobiDBLite consensus disorder prediction 1 95 - -
Lele51g1493 346 SMART znfxneu3 306 325 IPR000967 GO:0005634|GO:0008270
Lele51g1493 346 ProSiteProfiles Zinc finger PHD-type profile. 117 178 IPR019787 -
Lele51g1493 346 SUPERFAMILY RING/U-box 119 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1493 Lele-ChrLele51 11009677 11010900 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lele51g1493 None None None