Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1468 ATGGAGGAGACGACGAGGAAGTTCATTTGCAAGTTCTGCAACAGGAGTTTCCCTTGTGGGAAGTCTCTAGGTGGTCACATTAGAACCCACATGAATCAACATTCAAGCAATAATAATAAGGCCACTGCTAAATCAGGCAAGTTTGAAAGTAATGGTGTTGATGCTGCAACAAGAAAGAAGAGGAAGAAGAGAGATTTAAGTTCATCAGATTATGGCCTCAGAGAGAATCCCAGAAAGACAAAGAGGTTTGTTCATCATCATCCCTTATTCACTTTACATCATAATAAGGAGAAGTTCTGTAGAGAATGTGGGAAAGGATTTTCTTCTTTGAAAGCTTTATGTGGTCACATGGCTCGTCACTCTGAAAAAGATCAGAAGCAGAATTTTGCAATGATAGATTATGATGATGATGCTCAATCTGATACTGAAACTTCAGATCCAGAGGATTTGAAGAGAACAAGGTTCATGACCGTTAATAATAACCCAACTTCTTCTTCTTTGTCAGAGGTTGAACGAGAAGAAGCAGTAGAAGAAGTGGCTATGTGCTTGATATTGTTGTCTAAGGATTTTTATAACCATAATAAAGGTCGTTTTGGTTTTGACAAAGATTCTAATTCTGATAACTATTCTGCAGTTTTAGAGGCCAAATCAAACTCTGTTGATGGTCAGAATAAGGTTAATAATAAGAACTCTGTTTATAATGCTTCTGAGCTTGTGAAGTTGGGAAAGGACAAGATGAAGTTGAAGTTTTCAGATTCTTGGTATTCAAGATATGGTTCAAAAAATGAAGATTCAAGTGTTTCAGTTCATGGGGTTCTCAGAAATGGTGTTTTTAATCAACCAAAAGTGGAAGAAGATGGGCATGGATTTAAGGATTATGATGTCTTTGAACCAAGGAAGCTGATGATGAACAACAACAGATGCTACAGAAGCAAGAACAGTACTGAATCCAAAAAACTAGTAGTGTCGGGAAATTCAGACAAGTTTGATTCATTTAACAGTGCCAAACAAGAATATCTTGGTCACAATTTGGATGAAGTTTCCTGCTGCAAGAAGAAGAAGAAAACCAGTTTTCCTAATCATGACTCAGAAGAATCATATGCTAGTGCGGAGAAAATTACAGACAGTAGTACTGATTCTGATTCTTTTCCTTATTCTTATGAGAAGCCTAAGAGTAGTAACAAGGCCAAGATGAAGAAAGTGATGATGAAGAAGTCAAAGAAAACAAAGGAACACGAGTGCCCAATCTGCCACAGAACTTTCAGATCAGGCCAAGCCTTGGGAGGTCACAAAAGGTCCCATTTTGTAGGTGGATTTGAAGAGAACAACTACAACAACAACACTGAAATAGTCAAACAAGAATCTCAATCTCCTTCTTCCAGTTCTCCTTCTTCTCCTGCTGTTTTTGTTCCTTGCCTGGTTGATCTTAACCTACCTGCTCCTGTTGATGAATAG 1455 0.3794 MEETTRKFICKFCNRSFPCGKSLGGHIRTHMNQHSSNNNKATAKSGKFESNGVDAATRKKRKKRDLSSSDYGLRENPRKTKRFVHHHPLFTLHHNKEKFCRECGKGFSSLKALCGHMARHSEKDQKQNFAMIDYDDDAQSDTETSDPEDLKRTRFMTVNNNPTSSSLSEVEREEAVEEVAMCLILLSKDFYNHNKGRFGFDKDSNSDNYSAVLEAKSNSVDGQNKVNNKNSVYNASELVKLGKDKMKLKFSDSWYSRYGSKNEDSSVSVHGVLRNGVFNQPKVEEDGHGFKDYDVFEPRKLMMNNNRCYRSKNSTESKKLVVSGNSDKFDSFNSAKQEYLGHNLDEVSCCKKKKKTSFPNHDSEESYASAEKITDSSTDSDSFPYSYEKPKSSNKAKMKKVMMKKSKKTKEHECPICHRTFRSGQALGGHKRSHFVGGFEENNYNNNTEIVKQESQSPSSSSPSSPAVFVPCLVDLNLPAPVDE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1468 484 ProSitePatterns Zinc finger C2H2 type domain signature. 414 434 IPR013087 -
Lele51g1468 484 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Lele51g1468 484 MobiDBLite consensus disorder prediction 370 389 - -
Lele51g1468 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Lele51g1468 484 MobiDBLite consensus disorder prediction 354 399 - -
Lele51g1468 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
Lele51g1468 484 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Lele51g1468 484 SMART c2h2final6 98 120 IPR013087 -
Lele51g1468 484 SMART c2h2final6 412 434 IPR013087 -
Lele51g1468 484 SMART c2h2final6 8 30 IPR013087 -
Lele51g1468 484 SUPERFAMILY beta-beta-alpha zinc fingers 5 34 IPR036236 -
Lele51g1468 484 Pfam C2H2-type zinc finger 412 434 - -
Lele51g1468 484 Pfam C2H2-type zinc finger 100 122 - -
Lele51g1468 484 Pfam C2H2-type zinc finger 8 31 - -
Lele51g1468 484 MobiDBLite consensus disorder prediction 354 369 - -
Lele51g1468 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 412 434 IPR013087 -
Lele51g1468 484 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 484 - -
Lele51g1468 484 SUPERFAMILY beta-beta-alpha zinc fingers 409 435 IPR036236 -
Lele51g1468 484 MobiDBLite consensus disorder prediction 30 46 - -
Lele51g1468 484 MobiDBLite consensus disorder prediction 30 78 - -
Lele51g1468 484 MobiDBLite consensus disorder prediction 53 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1468 Lele-ChrLele51 10668838 10670292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1468 6 484 C2H2 Transcription Factor Family AT1G26610 35.078 2.24e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele51g1468 zf-C2H2_6 1e-05 CL0361