Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1436 ATGGCGATGCAAGGTGTGCGGAAGAACACGCTGTACGTGGGAGGGCTAGCGGAGGAGGTGAACGAGTCCATCCTTCATGCTGCCTTCATACCCTTTGGCGACATCAAGGACGTCAAGACGCCGCTTGATCAGGCCACTCAGAAGCACCGATCTTTCGGCTTCGTTACCTTCTTGGAAAGGGAGGACGCTGCCGCCTCCATGGACAACATGGACGGCTCTGAACTTTACGGCCGTGTGCTCACTGTTAACTACGCCCTTCCTGAGCGCATTAAGGGTGGTGAACAGGGTTGGGCTGCTCAGCCAATTTGGGCGGATGCGGATACTTGGTTTGAGCGGCAGCAACAAGAAGAGGAAATGCGTCGTATTGAGGCAGAAAATCGAGCTGCAATGCAAGCTGCAGAAGACATACGTAGAAAACAACTAGCCCAAGAGCGAGAAGGAGAAAAGGAAGAGGAAATTGACATGAAGGATGATCCTATGGCAAAGGCTGAAGCAGAGGCTCTGAAAGAAAATGGTTCTTAG 522 0.523 MAMQGVRKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAASMDNMDGSELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIRRKQLAQEREGEKEEEIDMKDDPMAKAEAEALKENGS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1436 173 Coils Coil 112 139 - -
Lele51g1436 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Lele51g1436 173 SUPERFAMILY RNA-binding domain, RBD 7 96 IPR035979 GO:0003676
Lele51g1436 173 Gene3D - 3 152 IPR012677 -
Lele51g1436 173 PANTHER ATPASE E1 3 171 - -
Lele51g1436 173 MobiDBLite consensus disorder prediction 131 173 - -
Lele51g1436 173 FunFam Peptidyl-prolyl cis-trans isomerase 1 154 - -
Lele51g1436 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Lele51g1436 173 SMART rrm1_1 10 83 IPR000504 GO:0003723
Lele51g1436 173 CDD RRM_PPIE 11 83 IPR034168 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1436 Lele-ChrLele51 10331876 10333757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1436 9 87 Eukaryotic Initiation Factors Gene Family AT3G11400 36.709 8.70e-11 57.4