Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1430 ATGCCAACTACGGGGATAGAGATGAACCTGGAAGAGAAAGTCACCATGGACTTGGTTCAGCCATCTGAACACTACTGCTATGTCCGTTGCAACTTCTGCAACACTGTGCTTGCGGTTGGGATACCATGCAAGAGGCTGCTGGACACAGTGACAGTGAAGTGTGGGCATTGCAGCAACCTGTCGTTCCTCAGCACCAGGCCTCCTCCTCCATCGCATCACAATCACGACAAGGAAACCCATCATCATCGTGATCGTGATACTAATAATAATACTATTATTGATCACACGCTCACCCTTCAGGGGTTTTATACCGATTACAAAAAGGGGCAAGCTTCATCGTCATCTTCCTCCTCCTTAGCTACATCCAATGATCCAGGGTCCCCCAAGGCAGCACCTTTCGTTGTCAAACCTCCTGAGAAGAAACACAGACTTCCTTCGGCTTACAATCGCTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCTAACCCTGAGATTCCTCATCGGGAAGCTTTCAGCGCTGCTGCCAAAAATTGGGCAAGGTACATTCCAAATTCGCCAAGCACTTCCATTTCAGCAAGAATAATGAAAGAGAGCTGTGTGGCAATGGAGTATTAG 618 0.479 MPTTGIEMNLEEKVTMDLVQPSEHYCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPPSHHNHDKETHHHRDRDTNNNTIIDHTLTLQGFYTDYKKGQASSSSSSSLATSNDPGSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSPSTSISARIMKESCVAMEY 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1430 205 CDD HMGB-UBF_HMG-box 143 179 - -
Lele51g1430 205 PANTHER PROTEIN YABBY 6-RELATED 20 189 IPR006780 GO:0007275
Lele51g1430 205 MobiDBLite consensus disorder prediction 113 134 - -
Lele51g1430 205 MobiDBLite consensus disorder prediction 70 89 - -
Lele51g1430 205 Pfam YABBY protein 21 182 IPR006780 GO:0007275
Lele51g1430 205 FunFam protein CRABS CLAW isoform X3 134 194 - -
Lele51g1430 205 SUPERFAMILY HMG-box 127 180 IPR036910 -
Lele51g1430 205 Gene3D High mobility group box domain 123 186 IPR036910 -
Lele51g1430 205 MobiDBLite consensus disorder prediction 65 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1430 Lele-ChrLele51 10272918 10274799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1430 8 193 C2C2-YABBY Transcription Factor Family AT1G69180 59.474 3.38e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele51g1430 YABBY 7.8e-57 CL0114