Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1422 ATGGGGAGAGGTAGGGTTCAGTTGAAGAAGATCGAGAACAAGATCAACAGGCAGGTTACGTTCTCAAAGAGAAGTCTTGGGATAATGAAGAAGGCTCATGAGATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTAGTCGTCTTCAATCACAAAGGAAAGCTCTTTCAATATGCCACTGATTCTTGCATGGAGAAAATACTGGAACGCTATGAAAGATATAACTATTCTGAGAAGCAGCTTGCTGGAAATGATTCTGGGACGCAGGAAAACTGGCCTATTGAGTATTCAAGACTGAAGGCAAAGATTGATCTCATGCAGAGAAGCCAAAGGCATTATATGGGCGAAGATCTTTCTTCACTCAGCCTCAAAGAGCTTCAGAGTTTAGAGCAAGAACTAGAAACAGCGATCAAACACATCCGCACACGCAAAAACCAGCTCATGTGCGAATCCATTTCTGAGCTTCAGAAAAAGGAGAAGGTGATACAGGAAGAGAATAGCATGCTTACAAAAAAGATAAAGGAGAGGGAGAAGGCTGCAACAGCAGCAGAGGCACAGCAGTCACAATGGGAGCAGCCAAGCCACCAACCTGCTCCTCCTCCTCCTCCTGACCCTTCTTTCTTACTCCCTCATACTCTTCCCACTTTAATCAACAGTGGAAATAATTATGCTGAAGAAGAAACGGCAGTGGGAAGGAACGACCATCTTGACCTGACCCTGGAGCCACTATATGGCTACCACCTCAGTTGCTTTACTTCTAGATTATAA 765 0.4444 MGRGRVQLKKIENKINRQVTFSKRSLGIMKKAHEISVLCDAEVALVVFNHKGKLFQYATDSCMEKILERYERYNYSEKQLAGNDSGTQENWPIEYSRLKAKIDLMQRSQRHYMGEDLSSLSLKELQSLEQELETAIKHIRTRKNQLMCESISELQKKEKVIQEENSMLTKKIKEREKAATAAEAQQSQWEQPSHQPAPPPPPDPSFLLPHTLPTLINSGNNYAEEETAVGRNDHLDLTLEPLYGYHLSCFTSRL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1422 254 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lele51g1422 254 Coils Coil 151 171 - -
Lele51g1422 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele51g1422 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele51g1422 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele51g1422 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele51g1422 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Lele51g1422 254 MobiDBLite consensus disorder prediction 175 218 - -
Lele51g1422 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele51g1422 254 MobiDBLite consensus disorder prediction 193 208 - -
Lele51g1422 254 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Lele51g1422 254 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele51g1422 254 Coils Coil 122 145 - -
Lele51g1422 254 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele51g1422 254 Pfam K-box region 87 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele51g1422 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele51g1422 254 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1422 Lele-ChrLele51 10139436 10148368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1422 1 252 MADS-box Gene Family AT1G26310 59.459 5.25e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele51g1422 K-box 1e-30 No_clan