Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1421 ATGGAGGTTAAGCCACCAGAGACCTCTGCTCAACACCAAAGGAGAAAGCCCAAGAGAAAACGAAGCCGGGAAGACCCAGAACTCGAACGGCTGAACTCATTGTCGTGGAACACCTCTCTTTCTGAAAATGACGATACTTTTTCTTTTCTTACTGGCTCCAATGAACTTGAAGGAGGTTTCCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTGTAGAAATCCCTGATCCCAAAGACGACAATAGGAAGAAGTCTAAACATAAAGCAGATTTTAAGAAACAGAAGCTAAGTGAAGTAGAGGGTGCCCGTAATGACGAGGTGAATTTTGAAGAAAACAAGGATGAGAGTGTGATGACTATAAAGAAGGAAAAGAAGAAGAAAAAGAAGAAGGAAAAGAAGGAAGCTGCTGGTTTTGATCAAGTTATTAATGTGAAGGATGATAATGTTGAAGAGAAGGATGATAATGATGAAGAGGACATTGATGAAATGGAATTTTATGCATGGAATGAGTTGAGACTTCATCATCTGCTCATGAAAGCAATTTACAAGCTTGGGTTCAAGGAGCCCACTCCGATACAGAAATCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGTTGGCCAAGGTTTCTCTTCAAGGCATCAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGGGAGAAGGCTGCAAAGATGGTTGAACAAAGGGATGAAGAACCTGACAAATATGCTCCTACTGGCCCTCTAAGGGCTCTAATAATTGCTCCAACTAGGGAACTTGCACTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAATATATCAATGTTAGGGTGACTCCTATAGTTGGGGGTATTTTAGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCCGAGATTATTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAATTGAGTTACATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGTCCAACACGACTGGTGGGGATGATCCTCAATCTGCACAAAATTGCATTACAATTTCAAGCTTCCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGCTCTTCAACAAAACAAAATCAATCAGCGTTAGATGGATTTAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATGCTGCAGTGATTGATCTCACTAATCCAACAATATTGGCAGCCAAGCTTGAAGAGTCATTTATTGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACTGTCCATAGACAAGGCCGAACAATGGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTTCGTATTCTTGGCACTAACGCTTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGTTTTGTTTTCCTTTCCTTTTCTCCATTCACGGTGTCTTACCTTAGCAATGGAGGTTATCAAGATCGAAGTGTTATTTGGGATCAACCAATGTTACAAAGCAACTCTGCTAAAGAGGAAAGTTGCAGGTTCCACCCCAAAGTGGGTAGGTGGTGTTTGCGAGTTTCCTTTCCTATGGGGGAAGTTGGTTGGTCGTGCTGGTTGTAATGCAACTGCTGGAGAGAAGGGAATATATGTGGAGAAATTGGCATTTGACAACGATGAAGAAAGATATGCCATTGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACTGATGTTGCAGCGAGGGGTCTTGATATTCCTGACGTTAGAGCAGTTGTCCACTATCAGCTTCCACATTCGGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCATTAATCTCACCAAAAGATACATCAAAGTTTGCTTCGTTGTGCAAGTCCTTTTCCAAGGACACTTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTTAAGCGATTATCTATTGCCCGTCAAATAGACAAAATAAGACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCAGTGGAGTTAGTTGTGGAAAATTATGACAGCGAGGAGGAAAGAGTGAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCAGTTGAAGAAGTTGCAGCAGGCGGGGATCACACCTCTGATGCAGGAACAGTTCCAACAATTAGCCAGGCGAAATCAAGGAAGTGGAGGAGGAACCTGCAAGCGAAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCACTTCAGGCTTTGCGGAATGCTGGTGAAGAGGTGCGCATGGACGTCAAGGAAAGCACTGGAAAGAGAATGGAGAATTTGAAACGAAAGAGAAAAGAAGAGAAAAAACGTTTGCGTGACCAACGAAGGAAGCAAAAGAGAAAGATGAAAAATGGAGAATGA 2628 0.4228 MEVKPPETSAQHQRRKPKRKRSREDPELERLNSLSWNTSLSENDDTFSFLTGSNELEGGFLSLEEIDEAEYGVEIPDPKDDNRKKSKHKADFKKQKLSEVEGARNDEVNFEENKDESVMTIKKEKKKKKKKEKKEAAGFDQVINVKDDNVEEKDDNDEEDIDEMEFYAWNELRLHHLLMKAIYKLGFKEPTPIQKSCIPAAAHQGKVGQGFSSRHQDVVGASETGSGKTLAFGLPILQRLLEEREKAAKMVEQRDEEPDKYAPTGPLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIIVGTPGRLWELMSAGEKHLIELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTTGGDDPQSAQNCITISSFQRKKRQTLVFSATVALSADFRKKLKRSSTKQNQSALDGFNSIEALSERAGMRPNAAVIDLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHRQGRTMVFCTSIAALRHISSLLRILGTNAWTLHAQMQQRARLKVLFSFPFLHSRCLTLAMEVIKIEVLFGINQCYKATLLKRKVAGSTPKWVGGVCEFPFLWGKLVGRAGCNATAGEKGIYVEKLAFDNDEERYAIDRFREDENGILVATDVAARGLDIPDVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIRRKDSQEKAQKSWFERNAESVELVVENYDSEEERVKKYRQMKASSTQLKKLQQAGITPLMQEQFQQLARRNQGSGGGTCKRKLVVIGQDCVEALQALRNAGEEVRMDVKESTGKRMENLKRKRKEEKKRLRDQRRKQKRKMKNGE 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1421 875 SMART ultradead3 186 436 IPR014001 -
Lele51g1421 875 MobiDBLite consensus disorder prediction 72 98 - -
Lele51g1421 875 MobiDBLite consensus disorder prediction 1 30 - -
Lele51g1421 875 Gene3D - 459 551 IPR027417 -
Lele51g1421 875 CDD DEADc_DDX24 178 453 - -
Lele51g1421 875 Pfam Helicase conserved C-terminal domain 475 537 IPR001650 -
Lele51g1421 875 Pfam Helicase conserved C-terminal domain 616 674 IPR001650 -
Lele51g1421 875 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 426 IPR014001 -
Lele51g1421 875 PANTHER RNA HELICASE 620 846 - -
Lele51g1421 875 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 167 195 IPR014014 GO:0003724
Lele51g1421 875 MobiDBLite consensus disorder prediction 851 875 - -
Lele51g1421 875 Pfam DEAD/DEAH box helicase 191 409 IPR011545 GO:0003676|GO:0005524
Lele51g1421 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 341 535 IPR027417 -
Lele51g1421 875 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 348 356 IPR000629 -
Lele51g1421 875 Coils Coil 237 257 - -
Lele51g1421 875 MobiDBLite consensus disorder prediction 71 98 - -
Lele51g1421 875 CDD SF2_C_DEAD 464 684 - -
Lele51g1421 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 409 IPR027417 -
Lele51g1421 875 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 463 715 IPR001650 -
Lele51g1421 875 SMART helicmild6 577 675 IPR001650 -
Lele51g1421 875 MobiDBLite consensus disorder prediction 837 875 - -
Lele51g1421 875 Coils Coil 839 875 - -
Lele51g1421 875 Gene3D - 605 802 IPR027417 -
Lele51g1421 875 Gene3D - 118 426 IPR027417 -
Lele51g1421 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 702 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1421 Lele-ChrLele51 10120414 10129954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1421 626 688 Eukaryotic Initiation Factors Gene Family AT3G13920 34.921 6.69e-08 53.9