LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g1362	ATGCATATACCAACACATAGAATTATAGCGTTGAAGAAAATCAATATCTTTGAGAAGGAGAAAAGGCAGCAACTTCTTACTGAAATAAGGACATTATGTGGAGCACCTTGTTACCAAGGTCTTGTTGAATTCCATGGGGCATTCTACACTCCAGACTCTGGACAGATAAGCATAGCGTTGGAGTACATGGATGGAGGATCACTAGCAGGGATCTTAGCAATGCATGGAAAAATACCTGAACCTATTCTTTCAGCCATGTTTCAGAAGCTCCTACATGGGTTAGGCTATCTGCATGGAGTCAGACATTTAGTTCACAGGGACATAAAGCCTGCCAATTTACTAGTAAATCTCAAGGGGAAACCAAAAATTACTGATTTTGGTATCAGTGCTGGCTTAGAGAATTCAGTGGCAATGTGTGCTACTTTTGTTGGAACTGTTACATACATGTCACCTGAGCGAATTCGAAATGATAGCTATTCTTTTCCTGCTGATATATGGAGCCTTGGTCTTGCCCTCCTTGAGTGTGGAACTGGAGAATTCCCATATGCAGCTAATGAAGGTCCTGTAAATCTTATGTTGCAGATTGTAGAAGATCCATCACCATCACCATCACCATCACCATCAAAACATAAGTTTTCACCTGAATTCAACTCCTTTGTGGGTGCTTGCTTACAGAAGGATCAAGATGCCAGGCCAACAGCAGATCAGTTGCTTCAGCACCCCTTTATCACAAAGTATGAGAATGCTGACATAGATTTAGCTGGGTTTGTACGAAGTGTCTTTGATCCAACGCAACGAATGAAGGACTTGGCTGATATGTTAATGATTCATTATTACTTACTATTTGATGGACCCCATGATCTCTGGCATCATACTAGGAGCTTATACAATGAAGGTTCAACTTTCAGTTTCTCTGGGAAGCAATACGTTGGTCCACACAATATTTTTGCGAAACTGTCAAAGGGATTGCCAAGCTTTAAGGATCTTGGAGTCGACGTTTCAAGCAGGCGAATGGGTACATTTCATGAACAGTTCATCATAGAACCCACCAGTCTCATTGGATGCTACTCCATAGCTAACCAAGAGTTGTACATAAACCAATAG	1104	0.413	MHIPTHRIIALKKINIFEKEKRQQLLTEIRTLCGAPCYQGLVEFHGAFYTPDSGQISIALEYMDGGSLAGILAMHGKIPEPILSAMFQKLLHGLGYLHGVRHLVHRDIKPANLLVNLKGKPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNDSYSFPADIWSLGLALLECGTGEFPYAANEGPVNLMLQIVEDPSPSPSPSPSKHKFSPEFNSFVGACLQKDQDARPTADQLLQHPFITKYENADIDLAGFVRSVFDPTQRMKDLADMLMIHYYLLFDGPHDLWHHTRSLYNEGSTFSFSGKQYVGPHNIFAKLSKGLPSFKDLGVDVSSRRMGTFHEQFIIEPTSLIGCYSIANQELYINQ	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g1362	367	SUPERFAMILY	Protein kinase-like (PK-like)	2	282	IPR011009	-
	Lele51g1362	367	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	103	115	IPR008271	GO:0004672\|GO:0006468
	Lele51g1362	367	Gene3D	-	262	347	-	-
	Lele51g1362	367	ProSiteProfiles	Protein kinase domain profile.	1	243	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g1362	367	SUPERFAMILY	NTF2-like	268	365	IPR032710	-
	Lele51g1362	367	PANTHER	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED	2	301	-	-
	Lele51g1362	367	SMART	serkin_6	1	243	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g1362	367	Pfam	Protein kinase domain	2	243	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g1362	367	FunFam	mitogen-activated protein kinase kinase 3	65	265	-	-
	Lele51g1362	367	CDD	PKc_MAPKK_plant_like	2	248	-	-
	Lele51g1362	367	Gene3D	Phosphorylase Kinase; domain 1	1	58	-	-
	Lele51g1362	367	Gene3D	Transferase(Phosphotransferase) domain 1	59	255	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g1362	Lele-ChrLele51	9390993	9394667	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g1362	1	367	MAP Kinase Kinase Gene Family	AT5G40440	66.588	0.0	560

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Lele51g1362		Pkinase	5.3e-52	CL0016