LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g1344	ATGTCCACTGTTGCTACAGCTCGAGGAATAGGCGTTGGAGCGACGAAGCTCCACCAAAGACCCCACCATGTTCACTCCAATCACAGCAATAAGTCTCTCTTTTTGGGTCAAAAGCTTCGATCTAAACCCTCTGTTGCAGAATCTCTATATGGTGGAAGAATCACAACCTTCTCGAACCCTAAATCGTTCGTGGCCTGCGCATTGGGAGGTGAATGCCTCAATTTGATTCATCACCTGTTTGTGGGTGTTGGGGTTGGGCTTCCCTGTACGGTGATGGAGTGTGGCGACATAATCTACAGAAGCACTCTTCCGAAGTCGAATGGCTTGACGATTACTACTCCTGGCGTGGTTTTGGCTCTCGGTGCTGTTTCCTACCTCTGGGCTACGCCTGGGGTGGCCCCTGGTTTCTTTGACATGTTTGTTCTTTCCTTTGTTGAAAGATTGTTCAGACCTACTTTTAGAAAGGATGACTTTGTCCTAGGGAAGAAGTTGGGTGAAGGATCCTTTGGTGTAGTTTATAGGGTTTCATCGACCAAGAAGCCCTCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATATGGTGCAGTAGAAATTTGGATGAATGAGCGTGTTCGGAGAGCTTGTGCAAACAGCTGTGCCGATTATGTTTACGGTTTCCTTGAGAGTTCTGGGAAGAAGGGTAGTGAATACTGGCTCATATGGAAATTTGAAGGGGACGCCACACTAGCAGACCTAATGCAGAGTAAAGAGTTCCCATATAATGTTGAAACAATGATTCTGGGCAAGGTCCAGGACTTACCTAAGGGATTGGAAAGAGAAAATAGAATCATACAAACAATTATGAGGCAGATCTTGTTTGCATTGGATGGTCTTCACTCAACTGGAATCGTGCATAGGGATATTAAGCCCCAGAATATTATTTTCTCTGAAGGATCTCGTACATTCAAGATTATTGATCTTGGAGCTGCAGCAGATTTGCGGGTCGGCATCAACTATATTCCTAATGAGTTTCTTTTGGATCCAAGATATGCTGCCCCAGAGCAGTACATCATGAGCACACAAACTCCCTCTGCACCCTCAGCTCCAGTTGCAACTGCACTTTCCCCAGTCCTATGGCAGTTGAATCTACCGGACAGATTTGATATCTATAGTGCTGGTCTAATATTTCTTCAAATGGCCTTCCCTGGATTACGCTCCGATAATTGCCTCATACAATTTAACCGTCAGTTGAAGAGGTGTGACTGTGACTTGGTTGCGTGGAGAAAAAGTGTAGAACCTCGTTGCGGTCCTGAACTAAGGAGAGGCTTTGAGCTTCTGGATTTAGATGGTGGAGTAGGATGGGAACTTCTGACATCGATGGTCCGCTACAAAGCAAGGCAACGGCTCAGTGCAAAAGCGGTGTTAGCTCATCCCTACTTTGACAGGGAAGGCTTGTTGGCATTGTCTTTCATGCAAAATCTAAGACTACAGCTCTTACGAGCAACACAGCAGGATTATGGAGAAGCAGCCAAATGGATTATTCAGCTCATGGCAAAATCTGGAACCTCAGAAGTTGGAGGATTTACGGAAGCTCAGCTCCAGGAACTAAGAGAAATTGAACCAAAGAAGAAGAACAATGTACAAAGAAATGCTTTAGCCTCGGCTCTCAAACTTCAGAGGAAGATCATAAAAACATTGAATGAGAGTGTGGATGAGCTTACCCGACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCCAGAGAAGAATGA	1761	0.4549	MSTVATARGIGVGATKLHQRPHHVHSNHSNKSLFLGQKLRSKPSVAESLYGGRITTFSNPKSFVACALGGECLNLIHHLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTITTPGVVLALGAVSYLWATPGVAPGFFDMFVLSFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVSSTKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADYVYGFLESSGKKGSEYWLIWKFEGDATLADLMQSKEFPYNVETMILGKVQDLPKGLERENRIIQTIMRQILFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPGLRSDNCLIQFNRQLKRCDCDLVAWRKSVEPRCGPELRRGFELLDLDGGVGWELLTSMVRYKARQRLSAKAVLAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWIIQLMAKSGTSEVGGFTEAQLQELREIEPKKKNNVQRNALASALKLQRKIIKTLNESVDELTRRRKSLWWSRWIPREE	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g1344	586	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	71	561	-	-
	Lele51g1344	586	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	299	311	IPR008271	GO:0004672\|GO:0006468
	Lele51g1344	586	SUPERFAMILY	Protein kinase-like (PK-like)	141	478	IPR011009	-
	Lele51g1344	586	CDD	STKc_SNT7_plant	162	476	-	-
	Lele51g1344	586	Coils	Coil	552	572	-	-
	Lele51g1344	586	Gene3D	Transferase(Phosphotransferase) domain 1	266	480	-	-
	Lele51g1344	586	Pfam	Protein kinase domain	159	351	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g1344	586	ProSiteProfiles	Protein kinase domain profile.	158	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g1344	586	ProSitePatterns	Protein kinases ATP-binding region signature.	164	191	IPR017441	GO:0005524
	Lele51g1344	586	SMART	serkin_6	158	476	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele51g1344	586	Gene3D	Phosphorylase Kinase; domain 1	145	238	-	-
	Lele51g1344	586	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	267	481	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g1344	Lele-ChrLele51	9189434	9194378	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g1344	276	477	Core Cell Cycle Gene Families	AT2G38620	30.986	3.52e-17	79.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Lele51g1344		Pkinase	1.5e-19	CL0016