Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1339 ATGCAGACTCATCAGGACTCTAATTTCTCCTACATATCGTCATGTCTTGAAGCAGAACAAGTACTTGACAACGAAGACTCCATTTCCCTCTCTCTTGCACCTCCTGGCCAACACAACCCCCACCTTACTAATACTTCTTCTAACAAATCTTCTTCATCCAACGACGTCGTATCTCTCCATCAACATCATCTTCATCACCACCACCAAAACTCTAGCTCTACTGATCTTGGAGTCACCGTTGCCCTTCATATCGGCCTTCCTACCGCTACTAATAACGCTGGTGCTGGAAGTTCTGGCAAACCCGACCCATTAATGAGTTCCTCTTCGTCTTTGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCTCCTGCTCAGATCCTTATCGGGCCCACCCAATTCTCTTGCTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAGTATAGGAAAGGGCCAGAATCTCTGAGAGGGGCAAAACCAGCGTCTTCGATTCTGAGACTTCCATACACACTACAAGAGGAAGCATGGAGCGAAGCCGTTCAGCTGCCGGAAGTGCGGGAAACCGTTCGCCGTCAGAGGAGATTGGAGGACTCACGAGAAGAACTGCGGCAAGCTCTGGTTCTGTATCTGTGGCTCTGA 672 0.4911 MQTHQDSNFSYISSCLEAEQVLDNEDSISLSLAPPGQHNPHLTNTSSNKSSSSNDVVSLHQHHLHHHHQNSSSTDLGVTVALHIGLPTATNNAGAGSSGKPDPLMSSSSSLGHVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPYTLQEEAWSEAVQLPEVRETVRRQRRLEDSREELRQALVLYLWL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1339 223 MobiDBLite consensus disorder prediction 91 110 - -
Lele51g1339 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Lele51g1339 223 MobiDBLite consensus disorder prediction 29 58 - -
Lele51g1339 223 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Lele51g1339 223 Gene3D Classic Zinc Finger 132 155 - -
Lele51g1339 223 Coils Coil 196 216 - -
Lele51g1339 223 MobiDBLite consensus disorder prediction 29 75 - -
Lele51g1339 223 PANTHER ZINC FINGER PROTEIN WIP2 30 184 IPR043584 GO:0003700|GO:0010468
Lele51g1339 223 SUPERFAMILY beta-beta-alpha zinc fingers 126 155 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1339 Lele-ChrLele51 9130739 9132015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1339 24 210 C2H2 Transcription Factor Family AT1G13290 50.267 1.73e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele51g1339 None None None