Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1335 ATGTCTCATGCTGCAATAGGCCTGAACTTCTATTCCTCCTCTTCGCCGGGGCACACCACGTCGCCGGTGATCATAGCTTTCACCCTCGGCATCCTCATATGTTTCATCGTAGGTTTCTGTTTCATCTACTTATGTCGATGTTGCTACATGAATTACCTCTATGCCTGGGCCTTCCATCGTCCCACCGCCAATAACCTTCTCCACCAGATTCATTCCCCCAACGGCGCCGCATCTCCGATCCGAGGCCTCGACCCGGCGCTGCTTCAAATCTTCCCCACCTTCCCCTACGCCTCCGTGAAGGAGTTCCAAGGGAAGAATAATAACAACAAAAGATATAGCCTAGAATGTGCGATTTGCTTGTTGGAATTCGAGGAAGATAGCTTCCTTCGCCTCTTAACCGGTTGCTGCCATGTCTTTCACCAAGAATGCATCGATCTCTGGCTTGAATCTCATAAAACATGCCCCGTTTGTCGCACAGATCTTGATTCTTCGTCAAAGGAAAAACGTCGCCATCAGGAAAACCAGACAAGAATAGAACAACCATTAACAGAGAATAATCACAACAGCAACAACAACAGCGAGACCCGTATTGATGTAAGGGAAGAAGACGAAGAAGAAAAAGAGGAAGTTTCAAGGAGAACAGAGGAAGAGGAAGAGGAAGAAGAAGTTGGAGAGGGAGAAGAGAATAAGAGGTTTTCAAGGTCACATTCAACGGGACATTCCATAGTTGTAATAAAAGGCGAAGAAAATGATGATGAGAATGAGGAGAATGATGAAGATAAATATACGTTGAAATTACCAGAGCATGTTCAGATTAAGCTAAGAGGACATAACTACACGCATAGTTGTGCCTCTTACACAGAGATGGCAAAACTTCATAGTAAATGTTGTTATGCTGAGGCCATATCAACCTGCACTACTTCTTCCTGCCAGCCTTTAAGGGTTTGA 948 0.4515 MSHAAIGLNFYSSSSPGHTTSPVIIAFTLGILICFIVGFCFIYLCRCCYMNYLYAWAFHRPTANNLLHQIHSPNGAASPIRGLDPALLQIFPTFPYASVKEFQGKNNNNKRYSLECAICLLEFEEDSFLRLLTGCCHVFHQECIDLWLESHKTCPVCRTDLDSSSKEKRRHQENQTRIEQPLTENNHNSNNNSETRIDVREEDEEEKEEVSRRTEEEEEEEEVGEGEENKRFSRSHSTGHSIVVIKGEENDDENEENDEDKYTLKLPEHVQIKLRGHNYTHSCASYTEMAKLHSKCCYAEAISTCTTSSCQPLRV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1335 315 SMART ring_2 116 157 IPR001841 -
Lele51g1335 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 166 IPR013083 -
Lele51g1335 315 Pfam Ring finger domain 115 158 IPR001841 -
Lele51g1335 315 PANTHER RING FINGER DOMAIN-CONTAINING 21 169 - -
Lele51g1335 315 MobiDBLite consensus disorder prediction 201 225 - -
Lele51g1335 315 FunFam E3 ubiquitin-protein ligase ATL6 72 164 - -
Lele51g1335 315 SUPERFAMILY RING/U-box 115 163 - -
Lele51g1335 315 MobiDBLite consensus disorder prediction 178 193 - -
Lele51g1335 315 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Lele51g1335 315 CDD RING-H2_EL5_like 115 158 - -
Lele51g1335 315 Coils Coil 200 220 - -
Lele51g1335 315 MobiDBLite consensus disorder prediction 160 259 - -
Lele51g1335 315 MobiDBLite consensus disorder prediction 161 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1335 Lele-ChrLele51 9082903 9083850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1335 22 291 C3H Transcription Factor Family AT2G35420 29.630 5.01e-31 115