Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1318 ATGAAAATTTTCGTTAAGACTCTGAAAGGCACTCACTTCGAAATTGAAGTGAAGCCAGAGGACACGGTTACTGAAGTGAAGAAAAAAATAGAAACTGTTCAGGGTGCGGATGTCTATCCTTCTGCACAACAGATGCTTATCCATCAAGGGAAGGTTCTCAAAGATAGCACCACCTTGGAGGAAAATAAAGTAGTTGAAAATAGTTTTGTCGTAATTATGCTTTCTAAGAGCAAAAGCTCATCTGGTGAGGGTTCTACTACTTCAGCTGCACCTTCAATCAAGACCCCAGCAACAAGTGCAGCTCCCACCTCTACTTCTGTTTCAAGTTCAACCACACCTCAAGCTCCTGCTGCAGCGCCTGCTCCTTCTCCTGCACCTGCTCCTGTCACTTCAGCCACTGCTGTGTCAGATTCTGATGTCTATGGACAAGCAGCATCTAACCTTGTAGCTGGAAGCAACTTGGAGGAAACCATTCAACAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTAGTCCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTAGAGTATTTGTACACAGGTATTCCAGAGCAAGCTGAAGCTCCTCCTATGGCCCGAGTGCCTGCAAGTCCACAAACTGCAAATCCTCCTGCAGCAGCTCCACAAGCTGCACAGCCAGCACCTACTCTTACACCAAATGCTAATCCCCTAGACCTTTTCCCCCAGGGCCTTCCCAATGTTGGTTCTGATGCTGCTGGTGCTGGCACCCTAGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGACTGACTTCCTTCGCCTGATAAATGAACCTGCTGAAGGTGGTGAGGGGAACATATTAGGGCAGCTTGCTGATGCCATGCCACAACAAATAGCTGTCACCTCTGAGGAGCGACAAGCAATTGAACGACTTGAAGCAATGGGTTTTGATCGTGCACTGGTGCTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGAATGA 1152 0.4714 MKIFVKTLKGTHFEIEVKPEDTVTEVKKKIETVQGADVYPSAQQMLIHQGKVLKDSTTLEENKVVENSFVVIMLSKSKSSSGEGSTTSAAPSIKTPATSAAPTSTSVSSSTTPQAPAAAPAPSPAPAPVTSATAVSDSDVYGQAASNLVAGSNLEETIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPMARVPASPQTANPPAAAPQAAQPAPTLTPNANPLDLFPQGLPNVGSDAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPAEGGEGNILGQLADAMPQQIAVTSEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1318 383 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele51g1318 383 FunFam UV excision repair protein RAD23 B 249 314 - -
Lele51g1318 383 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 372 - -
Lele51g1318 383 Pfam UBA/TS-N domain 154 192 IPR015940 -
Lele51g1318 383 Pfam UBA/TS-N domain 339 374 IPR015940 -
Lele51g1318 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 336 377 IPR015940 -
Lele51g1318 383 Pfam XPC-binding domain 258 314 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele51g1318 383 MobiDBLite consensus disorder prediction 78 131 - -
Lele51g1318 383 Gene3D - 147 197 - -
Lele51g1318 383 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lele51g1318 383 FunFam UV excision repair protein RAD23 homolog 330 378 - -
Lele51g1318 383 SUPERFAMILY XPC-binding domain 254 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele51g1318 383 FunFam UV excision repair protein RAD23 homolog 147 197 - -
Lele51g1318 383 SMART CBM 256 299 IPR006636 -
Lele51g1318 383 TIGRFAM rad23: UV excision repair protein Rad23 1 382 IPR004806 GO:0006289
Lele51g1318 383 MobiDBLite consensus disorder prediction 78 116 - -
Lele51g1318 383 CDD Ubl_Rad23 1 74 - -
Lele51g1318 383 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele51g1318 383 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele51g1318 383 MobiDBLite consensus disorder prediction 206 233 - -
Lele51g1318 383 PRINTS DNA repair protein Rad23 signature 350 364 IPR004806 GO:0006289
Lele51g1318 383 PRINTS DNA repair protein Rad23 signature 365 380 IPR004806 GO:0006289
Lele51g1318 383 PRINTS DNA repair protein Rad23 signature 333 349 IPR004806 GO:0006289
Lele51g1318 383 PRINTS DNA repair protein Rad23 signature 284 306 IPR004806 GO:0006289
Lele51g1318 383 SUPERFAMILY UBA-like 151 202 IPR009060 GO:0005515
Lele51g1318 383 SMART uba_6 154 194 IPR015940 -
Lele51g1318 383 SMART uba_6 339 376 IPR015940 -
Lele51g1318 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 152 195 IPR015940 -
Lele51g1318 383 Gene3D - 1 80 - -
Lele51g1318 383 FunFam UV excision repair protein RAD23 1 80 - -
Lele51g1318 383 CDD UBA1_Rad23_plant 148 197 - -
Lele51g1318 383 Gene3D - 248 314 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele51g1318 383 SUPERFAMILY UBA-like 320 381 IPR009060 GO:0005515
Lele51g1318 383 Gene3D - 330 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1318 Lele-ChrLele51 8918801 8924131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1318 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 1.04e-07 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1318 51 8918801 8924131 Lele51g1318 51 8918801 8924131 ECH
Lele49g1312 49 8955875 8961276 Lele51g1318 51 8918801 8924131 hybridization
Lele50g1517 50 20311337 20317261 Lele51g1318 51 8918801 8924131 hybridization