Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1314 ATGCCTGAACCTCGGAAGCAATCGATGAACATGAACAATTTCGGCAAAAAGATGAAGCAGAAGCAAAATCCCATTCCTTCGAGAAAGCTTCGCGTAATCTGTGACGACCCTTATGCGACAGATTCGTCTTCAAGCGAAGACGAAGGAGAACGACGATTATGGCCAAGGAAGATGAAACGAATCGTTCGTGAGCTCACTCTTCCTCTTTCTTCTGCTATGTCTAAATCCATTGAAACTGAAAGCTCATTTGAGGAGAGCAACAATGGAGTCATCATGAAGTCCTCATCCTCCAAGTTCGCTGCAGATGGTCAAACCCAGAACAAGAAGAGGGTTTTGACCAAAACCCCATCAACGAAAAGCTCGTCTTCTTCTTCGGGATTCAGAGGCGTTCGACAGAGAAAATGGGGGAAATGGGCTGCTGAAATTCGTGATCCATTCAAAGGTGTTCGTATCTGGCTTGGTACTTATAATACTGCACAGGAAGCTTCTCAAGCCTATGAAGCGAAGAAGATGGAGTTTGAAGCCATGGCTAAAGCTCAGGCTCAGGCTAAGGCTCAGGCTCAATCTGAGAAGAGTCACATTGTTTCTTCTTCTTCAGTTCAAGTCGTTGCTTCTGTATCCGAAGATTCTGAGAGTGTCTTCTCTCAAACCTCAACTTCCTCTGTGCTTGAACTCGATACCTCAACTTCCAAATCCACTGAAAATGGCGATGTCAACATCATCAATAGCAGTTCTAGCCAAGAACACAAAGAAGAAAATCGACAAGAACACCACCACCAACAGGCAGCAAATATTACTATGGAGGCCGAAAATTTTGAGAATGAATTTGCAGAACTCCAAATCCCAGATTTGAGCTTCCTGACCGAGCCGCCAGTAGTGCAAGCACCACTAACAACAACAGCAACATCATCTGCAGGAGGAGCAGTGGATGTTTCAGTTTCAGACATGAACCGTGGATTCGATCTGGACTGGGTAATGTTCGAGGATTTTGGTCAGGGTTTGGATGGCCCGTTTGGCTTGGACGACGTGCAAATATGTGGGTTTGATGAGGATGACATGAATGCAAGTGAGCTGCCTGATTTTGATTTTGATCTGTGTGTTGATGAGTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGCGTATAA 1152 0.4523 MPEPRKQSMNMNNFGKKMKQKQNPIPSRKLRVICDDPYATDSSSSEDEGERRLWPRKMKRIVRELTLPLSSAMSKSIETESSFEESNNGVIMKSSSSKFAADGQTQNKKRVLTKTPSTKSSSSSSGFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEAKKMEFEAMAKAQAQAKAQAQSEKSHIVSSSSVQVVASVSEDSESVFSQTSTSSVLELDTSTSKSTENGDVNIINSSSSQEHKEENRQEHHHQQAANITMEAENFENEFAELQIPDLSFLTEPPVVQAPLTTTATSSAGGAVDVSVSDMNRGFDLDWVMFEDFGQGLDGPFGLDDVQICGFDEDDMNASELPDFDFDLCVDEFAGWTEEPLNIPCV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1314 383 MobiDBLite consensus disorder prediction 216 261 - -
Lele51g1314 383 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
Lele51g1314 383 MobiDBLite consensus disorder prediction 95 128 - -
Lele51g1314 383 Gene3D AP2/ERF domain 126 182 IPR036955 GO:0003700|GO:0006355
Lele51g1314 383 MobiDBLite consensus disorder prediction 1 20 - -
Lele51g1314 383 MobiDBLite consensus disorder prediction 1 52 - -
Lele51g1314 383 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Lele51g1314 383 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Lele51g1314 383 MobiDBLite consensus disorder prediction 247 261 - -
Lele51g1314 383 CDD AP2 127 168 IPR001471 GO:0003700|GO:0006355
Lele51g1314 383 Pfam AP2 domain 125 175 IPR001471 GO:0003700|GO:0006355
Lele51g1314 383 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 28 258 - -
Lele51g1314 383 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Lele51g1314 383 MobiDBLite consensus disorder prediction 216 246 - -
Lele51g1314 383 SUPERFAMILY DNA-binding domain 125 173 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1314 Lele-ChrLele51 8888139 8889290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1314 26 382 AP2-EREBP Transcription Factor Family AT1G68550 32.162 4.95e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele51g1314 AP2 1.4e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1314 51 8888139 8889290 Lele51g1314 51 8888139 8889290 ECH
Lele49g1309 49 8924375 8925520 Lele51g1314 51 8888139 8889290 hybridization
Lele50g1521 50 20353505 20354632 Lele51g1314 51 8888139 8889290 hybridization