LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g1298	ATGTCTACTGCTACAAAACCAGAGGTTGCTGGCTCTAATGAAGAAGAAACTGAGCTCAGAAGAGGACCTTGGACTCTTGAAGAAGACAGTTTACTCATACACTGCATCGCTCTTCACGGTGAAGGTCGTTGGAACATGTTAGCCAAAACTGCAGGATTGAGGAGAACAGGAAAGAGTTGCAGATTGAGGTGGCTCAACTACTTGAAACCAGACATCAAGAGAGGGAATTTAACTCCACAAGAGCAACTTTTGATCCTTGAACTCCATTCCAAATGGGGCAACAGGTGGTCGAAAATTGCTCAGCATTTGCCAGGAAGAACAGACAATGAGATCAAGAATTATTGGAGGACAAGAGTTCAGAAACAGGCGCGCCAGCTCAACATTGAGTCTGGTAGTGACAGATTCATCGATGCTGTTCGATGTTTCTGGATGCCTAGGTTGTTACAAAAGATGGAACAAAACTCCTCATCTTCCTCTTCCTCTGTCATAAACATGAATAACTCTGAGAACTCTGCAATTTATGTCCCTTCCCTGTCTCCTGCACAAGGAGAATTCACAGATATTGCAGCAAATCACACAAGCAACACCACCACCACCAACAACAATCTTAATTTCCCAGATCATTATTCACTGCAATTACAAGAGCCGTTTAAAATATCAGAAAACCAGACAAGTATTTCTCTTCCTCAAGCGTTGGAGAACTACAACAATGATGTTTGCTTCAATAATCCAGTTGAAGATTATATTTATGGCATGGAAGGGCTAAACTTGGAGCCATTTTCAAGAACTGATGGAAGTAATTATGGGATTCCCCAGTTTGATTATTGTCAGAGTTCAGAAAGTGAAGAATGGGTGTTAAGCAGCATGGGAGAATATTCTTTGTGGAACATGGATGAAGAAATGTGA	906	0.4161	MSTATKPEVAGSNEEETELRRGPWTLEEDSLLIHCIALHGEGRWNMLAKTAGLRRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSDRFIDAVRCFWMPRLLQKMEQNSSSSSSSVINMNNSENSAIYVPSLSPAQGEFTDIAANHTSNTTTTNNNLNFPDHYSLQLQEPFKISENQTSISLPQALENYNNDVCFNNPVEDYIYGMEGLNLEPFSRTDGSNYGIPQFDYCQSSESEEWVLSSMGEYSLWNMDEEM	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g1298	301	ProSiteProfiles	Myb-like domain profile.	69	119	IPR001005	-
	Lele51g1298	301	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	69	123	IPR017930	-
	Lele51g1298	301	CDD	SANT	78	117	IPR001005	-
	Lele51g1298	301	CDD	SANT	23	68	IPR001005	-
	Lele51g1298	301	SMART	sant	73	121	IPR001005	-
	Lele51g1298	301	SMART	sant	20	70	IPR001005	-
	Lele51g1298	301	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	15	198	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele51g1298	301	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele51g1298	301	Gene3D	-	18	74	-	-
	Lele51g1298	301	ProSiteProfiles	Myb-like domain profile.	16	68	IPR001005	-
	Lele51g1298	301	Pfam	Myb-like DNA-binding domain	21	68	IPR001005	-
	Lele51g1298	301	Pfam	Myb-like DNA-binding domain	74	117	IPR001005	-
	Lele51g1298	301	SUPERFAMILY	Homeodomain-like	19	115	IPR009057	-
	Lele51g1298	301	FunFam	MYB transcription factor	78	141	-	-
	Lele51g1298	301	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	18	68	IPR017930	-
	Lele51g1298	301	FunFam	Myb transcription factor	21	73	-	-
	Lele51g1298	301	Gene3D	-	77	119	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g1298	Lele-ChrLele51	8705525	8706646	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g1298	16	160	MYB Transcription Factor Family	AT1G68320	82.069	2.57e-86	258

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele51g1298		Myb_DNA-binding	1.4e-14	CL0123