Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1278 ATGGACCGTCCGATCCAAATGATCTGTTCATATGCCAGGAGACGCCTTTTATCCAGTGCACCAGCACCACACACAGGCTATCTTACACGGGAGATCAAATTACTGAACGACCCCGGGACTAGATCATCAGAAAACCGATATTTAATGTTTTTCTTTGGGGGCAATTACGTTGAATCTTGTATAGCGAAAATGCATAATAAGGACGCTTGCTCGTCTTCAAATGGCGGAGTTGGCACCAACATCGCTGCTTCTGGTCAAATGCAGTCGAATGGCGCCTTTTATGGGGGCATCTACTCCACTCTGTTTTCTGACAAGCTATCCCTGCCTGCTACAGACAATGTCGACCTCTCGCTTCACTCGTATGAAGGAAGCTCTCCCCTGAAGCACAGTGACTCGCCGATTCAGAGTCACCTGTACGACTCCTGTGCCATACAGAATCATCAAGATATGGTGAACCGCCATAGCATGTGCCTAAAGCGCCTCGCCGAAACCTCAAAGGAGGTTGAGGCTCTGCGGCAGGAGAATAACCAACTTCGAGCTGTGAACAGGGAGCTGAACAACCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGCTCCTCTGGTCATACTGAAGCATTTGACGTCATAAATGGGTTTCGTGGCTTACGTGTTGAGGACAATTTCGGGGATGGGAAAGAGAACTGTGAAAATTGGAATAAGGATCAAGAGGTTTTGAACGAGAGCCCAACAAGTGTGATCGAGAACACTGTCGAAGTGGAAAGGTTCTCGCTGCCCAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAGGTTGCTCAGGCTGCGACCACTGGTGCCAGCAATGGAAGTCGCCCCAAGGGCGCTGCTCGGCCACGCACATCTTTGACTTCAACTGACGTCGTTCAAAAGGTATATGTGCGTGGAGGGAAGAGGGAGGAAGAGCCTCTGGAGATGGTGGTGTATAACCAAGGCATGTTCAAGACGGAGCTGTGCAACAAATGGCAGGAGACGGGGACATGCCCCTATAAGGATCAGTGCCAATTCGCTCACGGCATTGGTGAACTCCGCCCAGTCATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGCGTTGTATGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATTGCACAGCCACAGCCTAAGCCCAGGGCAATGAACCTGCACAGATAA 1251 0.5028 MDRPIQMICSYARRRLLSSAPAPHTGYLTREIKLLNDPGTRSSENRYLMFFFGGNYVESCIAKMHNKDACSSSNGGVGTNIAASGQMQSNGAFYGGIYSTLFSDKLSLPATDNVDLSLHSYEGSSPLKHSDSPIQSHLYDSCAIQNHQDMVNRHSMCLKRLAETSKEVEALRQENNQLRAVNRELNNQLSLLIQVSVQNQLDGSSGHTEAFDVINGFRGLRVEDNFGDGKENCENWNKDQEVLNESPTSVIENTVEVERFSLPKSISVRSNGYLKVAQAATTGASNGSRPKGAARPRTSLTSTDVVQKVYVRGGKREEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPQPKPRAMNLHR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1278 416 MobiDBLite consensus disorder prediction 280 299 - -
Lele51g1278 416 Gene3D - 364 400 - -
Lele51g1278 416 Gene3D - 325 363 - -
Lele51g1278 416 FunFam Zinc finger protein 36, C3H1 type-like 1 364 400 - -
Lele51g1278 416 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 331 356 IPR000571 GO:0046872
Lele51g1278 416 FunFam zinc finger CCCH domain-containing protein 15-like 324 363 - -
Lele51g1278 416 SUPERFAMILY CCCH zinc finger 327 362 IPR036855 GO:0046872
Lele51g1278 416 PANTHER CCCH ZINC FINGER/TIS11-RELATED 146 403 IPR045877 GO:0003729
Lele51g1278 416 ProSiteProfiles Zinc finger C3H1-type profile. 330 358 IPR000571 GO:0046872
Lele51g1278 416 SMART c3hfinal6 368 395 IPR000571 GO:0046872
Lele51g1278 416 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Lele51g1278 416 ProSiteProfiles Zinc finger C3H1-type profile. 368 396 IPR000571 GO:0046872
Lele51g1278 416 SUPERFAMILY CCCH zinc finger 364 398 IPR036855 GO:0046872
Lele51g1278 416 Coils Coil 161 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1278 Lele-ChrLele51 8520857 8523354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1278 137 403 C3H Transcription Factor Family AT1G68200 53.818 1.62e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele51g1278 zf-CCCH 5.8e-10 CL0537