Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1238 ATGGCGAACCTCTCAGAGACCCATGCTTGTGCGCCTTCCACCGAACGTGGTCGGGGTATCCTCATTTCAGGCGACCCCAAATCCAACAACATTCTATACTGCACCGGGCGATCCGTCATGATCCGCAACCTCGATAACCCACTTCAGGTTTCCGTTTATGGAGAGCATGGCTACCCTGTCACGGTGGCACGGTACTCTCCCAACGGTGAATGGATTGCTTCAGCGGATGTCTCTGGCACAGTTCGGATCTGGGGCACCCATAACGATTTTGTTCTTAAGAATGAGTTCCGGGTCCTTTCGGGTCGGATAGATGACCTTCAGTGGTCTGCCGACTGTTTGAGGATCGTCGCTTGCGGGGATGGCAAAGGGAAGTCGTTTGTTCGTTCTTTTATGTGGGATTCAGGAAGCACTGTTGGGGATTTTGATGGTCATTCACGGCGAGTTTTAAGTTGTGCATTCAAACCAACAAGGCCTTTTCGTATTGTCACATGTGGGGAAGACTTTTTGGTGAATTTTTATGATGGTCCTCCATTCAAGTTCAACATGTCCATCAGGGACCATTCAAATTTTGTGAATTGTGTTAGATTTTCTCCTGATGGAACCAAATTCATAACTGTGAGTTCAGATAGAAAGGGTATCATATATGATGGGAAGAGTGGGGACAAACTTGGCGAGTTGTCTGTAGAGGGTGGCCACAAGGGCAGCATATATGCTGTAAGTTGGAGTCCTGACAGTAAACAGGTGCTTACTGTGTCTGCTGATAAATCTGCAAAGATCTGGGATATTCTTGAGGATGGAAGTGGAAGTTTAAATAAGACTTTATCGAGTTCTGAATCTGGTGGTGTGGAGGATATGCTTGTTGGTTGTCTTTGGCAGAATAATCATCTTCTCACTGTCTCCCTTGGTGGCATGATTAATTTATATTCAGCAACAGATTTAGATAAAAGTCCTATATCATTATCTGGCCACATGAAAAATGTAGCTCTTTTAACTATACTCAACAAAAGCGAAAAGATGCTCTTGTCATGTAGCTATGATGGCGTGATCTTAAAATGGATTGTAGGCATTGGTTGCTGTGGTACATTGGACAGTAAACAATTTGGATTAATTAAATTGTTTGCAGCCGGTGAGGAAGAAGTCATTACAGCTGGATTTGACAACAAGGTATGGAGGGTTCCTTTGGAAGGGGCTAATTTCAGAGCTCCTGAGCAAATTGATGTTGGCAGTCAGCCAAAAGACTTGAGCCTTGCCCTTGATTCTCCTAAACTGGCTTTGGTAGCAATTGAATCTGGGGTTGTTTTGCTTAATGGTTCAGAAATTGTCGCAACTCATAACCTGGGCTTCACTGTGACTGCATCTGCAGTTTCACCTGATGGAAGTGAAGCAATTGTAGGTGGGCAAGATGGTAAGTTGCATATATATTCTGTCTCAGGAAATACACTTACAGAAGAGAAAGTCCTTGAAAAGCACCGGGGTGCTATCAGTGTGATAAAATATTCTCCAGATGTCACCATGTTTGCTTCAGCTGACTTGAATCGTGAAGCTGTTGTTTGGGACCATGACTCTAAAGAGGTGAAGCTTAATAACATGTTATTTCACACTGCACGTATTAACTGCCTGGCTTGGTCACCTGATAACACCCTCATAGCTACTGGGTCACTTGATACATGCGTCATCATATATGAAATTGGGAAGCCAGCTTCAAGCCGCAGAACCATAAAAGCAGCTCATTTAGGTGGAGTCTACGGGTTGACTTTTATTGATAATGATAGCGTGGTCAGTTCTGGAGAAGATGGCTGTATTCGTGTTTGGAAATTGGCTTCGGAATAA 1830 0.4399 MANLSETHACAPSTERGRGILISGDPKSNNILYCTGRSVMIRNLDNPLQVSVYGEHGYPVTVARYSPNGEWIASADVSGTVRIWGTHNDFVLKNEFRVLSGRIDDLQWSADCLRIVACGDGKGKSFVRSFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYDGPPFKFNMSIRDHSNFVNCVRFSPDGTKFITVSSDRKGIIYDGKSGDKLGELSVEGGHKGSIYAVSWSPDSKQVLTVSADKSAKIWDILEDGSGSLNKTLSSSESGGVEDMLVGCLWQNNHLLTVSLGGMINLYSATDLDKSPISLSGHMKNVALLTILNKSEKMLLSCSYDGVILKWIVGIGCCGTLDSKQFGLIKLFAAGEEEVITAGFDNKVWRVPLEGANFRAPEQIDVGSQPKDLSLALDSPKLALVAIESGVVLLNGSEIVATHNLGFTVTASAVSPDGSEAIVGGQDGKLHIYSVSGNTLTEEKVLEKHRGAISVIKYSPDVTMFASADLNREAVVWDHDSKEVKLNNMLFHTARINCLAWSPDNTLIATGSLDTCVIIYEIGKPASSRRTIKAAHLGGVYGLTFIDNDSVVSSGEDGCIRVWKLASE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1238 609 SMART WD40_4 177 216 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 219 261 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 46 85 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 566 605 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 437 475 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 134 174 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 267 309 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 313 353 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 89 133 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 524 562 IPR001680 GO:0005515
Lele51g1238 609 SMART WD40_4 480 519 IPR001680 GO:0005515
Lele51g1238 609 CDD WD40 56 352 - -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 229 262 - -
Lele51g1238 609 SUPERFAMILY NHL repeat 176 433 - -
Lele51g1238 609 Gene3D - 11 339 IPR015943 GO:0005515
Lele51g1238 609 FunFam Actin-interacting protein 1 11 337 - -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 53 84 - -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Lele51g1238 609 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 606 - -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 519 - -
Lele51g1238 609 ProSitePatterns Trp-Asp (WD) repeats signature. 248 262 IPR019775 -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 84 IPR001680 GO:0005515
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 574 609 IPR001680 GO:0005515
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 574 609 - -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 563 IPR001680 GO:0005515
Lele51g1238 609 FunFam Actin-interacting protein 1 338 606 - -
Lele51g1238 609 Pfam WD domain, G-beta repeat 533 561 IPR001680 GO:0005515
Lele51g1238 609 Pfam WD domain, G-beta repeat 51 84 IPR001680 GO:0005515
Lele51g1238 609 Pfam WD domain, G-beta repeat 576 605 IPR001680 GO:0005515
Lele51g1238 609 Pfam WD domain, G-beta repeat 183 211 IPR001680 GO:0005515
Lele51g1238 609 Pfam WD domain, G-beta repeat 224 261 IPR001680 GO:0005515
Lele51g1238 609 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 45 565 IPR011047 -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 563 - -
Lele51g1238 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 262 IPR001680 GO:0005515
Lele51g1238 609 Gene3D - 8 605 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1238 Lele-ChrLele51 8194346 8197926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1238 131 293 Miscellaneous Gene Families AT5G08390 27.273 5.23e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1220 49 8171710 8175283 Lele51g1238 51 8194346 8197926 hybridization
Lele50g1623 50 21286310 21289873 Lele51g1238 51 8194346 8197926 hybridization