Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1234 ATGAGGAAGCCTTGCTGTGATAAGCAAGACATGAACAAAGGAGCTTGGTCTAAACAAGAAGACCAGAAACTCATTGATTACATCAAGAAACATGGCGAAGGTTGCTGGCGTACTCTTCCTCAAGCCGCAGGATTACTTCGCTGCGGCAAGAGTTGCAGGCTGAGGTGGATAAATTATCTAAGGCCAGACCTTAAAAGAGGAAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCCCTGCTTGGCAACCGTTGGTCTCTAATAGCTGGAAGATTACCCGGAAGAACAGACAATGAAGTAAAGAATTATTGGAACTCTCATCTAAGAAGAAAACTCATCAACAGGGGAATCGATCCAAGTAATCACAGACTGAGTCACAAATTCCCTTCTTCTCTTCATCAAAATCAAACAACAACATCTGGTAGCTCAGCATCATCAGGCTTGAAACAACACAAAGATGCCAAGAACAACAGCAACATTATTGAGCCAACGACAACAAATAAGCCTAAAACTGGTGACAATATTAATCATGAACAAGTAGTTTCAGATGCTGCAAGTGGCTTGGAAGATGAATCCTCTGCCTTATTACCAGATCTAAACCTTGATCTCACTATTAACATTCCTTCAAGTGCTGCTTATGATGAACACAATCATCATCAAAAGCCAATTCTTCATCATGAATCTTCTAAGTCTCCAAGGACTATGCAATTAGCTTCCTCTCCAACCCTACTTCTGTTTCAGTGA 753 0.4104 MRKPCCDKQDMNKGAWSKQEDQKLIDYIKKHGEGCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINRGIDPSNHRLSHKFPSSLHQNQTTTSGSSASSGLKQHKDAKNNSNIIEPTTTNKPKTGDNINHEQVVSDAASGLEDESSALLPDLNLDLTINIPSSAAYDEHNHHQKPILHHESSKSPRTMQLASSPTLLLFQ 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1234 250 MobiDBLite consensus disorder prediction 232 250 - -
Lele51g1234 250 FunFam MYB-related transcription factor 12 65 - -
Lele51g1234 250 CDD SANT 15 60 IPR001005 -
Lele51g1234 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lele51g1234 250 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lele51g1234 250 CDD SANT 68 111 IPR001005 -
Lele51g1234 250 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lele51g1234 250 SMART sant 12 62 IPR001005 -
Lele51g1234 250 SMART sant 65 113 IPR001005 -
Lele51g1234 250 FunFam MYB transcription factor 67 128 - -
Lele51g1234 250 Gene3D - 68 174 - -
Lele51g1234 250 MobiDBLite consensus disorder prediction 219 250 - -
Lele51g1234 250 MobiDBLite consensus disorder prediction 127 178 - -
Lele51g1234 250 Gene3D - 13 65 - -
Lele51g1234 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lele51g1234 250 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 204 - -
Lele51g1234 250 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lele51g1234 250 MobiDBLite consensus disorder prediction 122 178 - -
Lele51g1234 250 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lele51g1234 250 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1234 Lele-ChrLele51 8152382 8154239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1234 2 241 MYB Transcription Factor Family AT4G38620 52.590 4.06e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele51g1234 Myb_DNA-binding 1.2e-14 CL0123