Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1233 ATGTACGGCGGGGCAGCTTGCTGTTCTTCCTCCTCCTCCGCCATCGCCGCCGGTGCTGTGTTCAAGAAGGACTGCATCGATCTGGTTCGTCGGATCTCACTTCTCTCCCATTTGTTCGAGGAGATTAGGGATTTAAAGGCTGTTAATTCTATTGAGTTGGATGCTTCCACTTCTTCCAATGGCTCTGCATCTTCCTGGTCCTTTGATCTGGTGCTTGCTCTTCAATCTGCCAAACGCCTTCTATCCATCGCTAATAACTTTCATTCCAGTTGCACTTCTGCTGAAGCTGCAAAGACTATTGTCTTCCAATTTCAGTGCGTGACATGGAAATTGGAGAAACTTTTGAGCGAATTACCTCATGACCATTTGGACATATCAGAAGAACTTAGAGAACAGGTGGAATTGGTGAGAACACCAGTGAGTCGAGCCAGTGAAAGATATGGATTTATGATCTCAAATATGTCATCTAGTGACATATCCCAGCAACTGGCTGAAAACGCTAGTAGGGTTAATGGAAAATCTAGGAATCAGTTGCAAAAGCAAAACAGCTGCCCTGAACATATGAGCGGTCTTACATACAGAGATAGAGCAAGTGGAAATTTAACTTGTCCAAAAACTCGCCAGAAGTTGGAAAATTTGAACCTAACACCAAATTATGTTTTAAGGAGCCTTATTAATCAATGGCGTATAGATAACAACTTTGAGCAGCCAAGAGGACTGACCCATGGCGAGCTAAAACAGAGTGATGGATCATTTAGAGATGTTACGGGTGAAATGGCAACCATTGAGGCTCTGATCTTGAAGCTCTCAAGCCATTCCATTGAGGACCATAGAGCAGCTGTCACTGAAATCCGATCACTTTCAAAACGGAGCACAGACAACAGAATACTAATTGCTGAAGCTGGAGCGATTCCAGTTCTGGTCAACCTGTTAACATCAGAAGATTTATTGACACAAGTGAATGCAGTTACTTCAATTCTCAACCTCTCTATATATAAAAACAACAAGGGACTTACAATGCTTGCAGGGAAGAAGGAAGCAACATCAGCATTATTCTACTTATGCATTAATGAAGGGAAGAAGGGTAGGGCCATTAGATCAGGGATCATCCCTGCATTGTTGAAGTTGCTTACAGATTCAAGAAAATCAATGGTTGATGAAGCCCTAACAATAATAGATGCTAATAATCTTGCTTGTTTAAGTACTCTTAGTGGTGTCAAGCCATTGACTGAACTTGCTCTCAGTGGCACTGAGAGGGCTAAACGGAAGGCCACTTCATTATTGGAACATATTCGCAAGTCCCAGGAGCTTTGA 1314 0.4269 MYGGAACCSSSSSAIAAGAVFKKDCIDLVRRISLLSHLFEEIRDLKAVNSIELDASTSSNGSASSWSFDLVLALQSAKRLLSIANNFHSSCTSAEAAKTIVFQFQCVTWKLEKLLSELPHDHLDISEELREQVELVRTPVSRASERYGFMISNMSSSDISQQLAENASRVNGKSRNQLQKQNSCPEHMSGLTYRDRASGNLTCPKTRQKLENLNLTPNYVLRSLINQWRIDNNFEQPRGLTHGELKQSDGSFRDVTGEMATIEALILKLSSHSIEDHRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDLLTQVNAVTSILNLSIYKNNKGLTMLAGKKEATSALFYLCINEGKKGRAIRSGIIPALLKLLTDSRKSMVDEALTIIDANNLACLSTLSGVKPLTELALSGTERAKRKATSLLEHIRKSQEL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1233 437 SUPERFAMILY RING/U-box 197 236 - -
Lele51g1233 437 MobiDBLite consensus disorder prediction 169 188 - -
Lele51g1233 437 FunFam RING-type E3 ubiquitin transferase 245 340 - -
Lele51g1233 437 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 302 336 IPR000225 GO:0005515
Lele51g1233 437 SUPERFAMILY ARM repeat 261 432 IPR016024 -
Lele51g1233 437 SMART arm_5 291 331 IPR000225 GO:0005515
Lele51g1233 437 SMART arm_5 357 399 IPR000225 GO:0005515
Lele51g1233 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 235 IPR013083 -
Lele51g1233 437 Pfam Armadillo/beta-catenin-like repeat 292 330 IPR000225 GO:0005515
Lele51g1233 437 Gene3D - 343 436 IPR011989 -
Lele51g1233 437 PANTHER U BOX DOMAIN-CONTAINING 342 392 - -
Lele51g1233 437 Gene3D - 242 342 IPR011989 -
Lele51g1233 437 ProSiteProfiles U-box domain profile. 193 235 IPR003613 GO:0004842|GO:0016567
Lele51g1233 437 MobiDBLite consensus disorder prediction 169 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1233 Lele-ChrLele51 8142405 8145407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1233 199 434 U-box Gene Family AT1G71020 45.906 4.21e-79 251
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1233 51 8142405 8145407 Lele51g1233 51 8142405 8145407 ECH
Lele50g1625 50 21308513 21311596 Lele51g1233 51 8142405 8145407 hybridization