Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1169 ATGGCAGAAACGTGCGGAAGCTGTATATCTTGGTTCGACGATATTTACTGGAGCCATTTCAAATTCATGCATTTTGCACTGCGTCTCCCTCCTGGTTTTGATCAACACCTTGCACTTCCCAAAAGGTTTTCAGATAGCATGAAAAGGAAATTGCCAGATACTGTGACCCTTAAAGGTCCTGGTGGCTCTGAGTTGAATGTCAGATTGTCATTTAGAGATGATATGTTGTACTTCACGCATGGTTGGCAACAATTTGCACAAGATCACTTTTTGGAAGAGAATGATCTCCTGATCTTCAAGTACAATGGTGAATCACAGTTTGATGTTCTAATATTTGACCGTAAGAACTTATGTGAGAAGGTGTCTTCTTATTTTGTTCGGGACAGCGGGCAAACAAATAAGAGAAAGACAGATAACTGGGTGGAAGAAGAAAATATCCCTTCAAATATCGATGTCAAAGTGGCTTCGCCTGAGAAGAAATCTGCTCGTGGCAAAAGTAAAAAGACTCGTAAAGCTACTGTGGAATCCACCCCTGCCCAGCAAACTAAGCGGAGAGGAAGATCTAAGGGATCTGATGCGCATGCTGGAGAAATTGAATGGATTCCTGATGCTGAACCTGTATCCACGAGCAGAAATAAGATGGTTGAAATAGTGGATGCTTCAAGCAAAAGGGCTATCATAGAGAATGCGAAAAAGAATACGCTCGAATTGGCTCAAGCAGAATGTCCCACGGATGGATTCTATGTAGTCATGCGACCCTCGCATGTATTCGGGAAATTCTATATGACAATCCCTACGAAGTGGATGACAGAGCATTTCCCTCCACAATCTGAAGATGTGATATTATGTGTGGGAGAGAGCGAATGGCCTGTTAAATATGCCTTCGAAGCCAGTCGCCGGAGTGGTGGACTCACTGGTGGGTGGAAACAGTTTGTGCTGGACAATAACCTGCGAGAATTCGATGTTTGTGTGTTTAACCAAACACGTTTAGGCAAGAAGCCACTGACTCTTGAAGTGAAAATATTCAGAGTTGATGTGTAG 1041 0.4313 MAETCGSCISWFDDIYWSHFKFMHFALRLPPGFDQHLALPKRFSDSMKRKLPDTVTLKGPGGSELNVRLSFRDDMLYFTHGWQQFAQDHFLEENDLLIFKYNGESQFDVLIFDRKNLCEKVSSYFVRDSGQTNKRKTDNWVEEENIPSNIDVKVASPEKKSARGKSKKTRKATVESTPAQQTKRRGRSKGSDAHAGEIEWIPDAEPVSTSRNKMVEIVDASSKRAIIENAKKNTLELAQAECPTDGFYVVMRPSHVFGKFYMTIPTKWMTEHFPPQSEDVILCVGESEWPVKYAFEASRRSGGLTGGWKQFVLDNNLREFDVCVFNQTRLGKKPLTLEVKIFRVDV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1169 346 MobiDBLite consensus disorder prediction 156 172 - -
Lele51g1169 346 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Lele51g1169 346 MobiDBLite consensus disorder prediction 185 199 - -
Lele51g1169 346 MobiDBLite consensus disorder prediction 151 203 - -
Lele51g1169 346 Gene3D - 225 345 IPR015300 -
Lele51g1169 346 ProSiteProfiles B3 DNA-binding domain profile. 247 345 IPR003340 GO:0003677
Lele51g1169 346 CDD B3_DNA 32 113 IPR003340 GO:0003677
Lele51g1169 346 Gene3D - 18 118 IPR015300 -
Lele51g1169 346 CDD B3_DNA 247 343 IPR003340 GO:0003677
Lele51g1169 346 SUPERFAMILY DNA-binding pseudobarrel domain 20 115 IPR015300 -
Lele51g1169 346 Pfam B3 DNA binding domain 247 343 IPR003340 GO:0003677
Lele51g1169 346 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Lele51g1169 346 SUPERFAMILY DNA-binding pseudobarrel domain 247 335 IPR015300 -
Lele51g1169 346 SMART B3_2 247 345 IPR003340 GO:0003677
Lele51g1169 346 SMART B3_2 24 115 IPR003340 GO:0003677
Lele51g1169 346 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 345 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1169 Lele-ChrLele51 7711523 7715123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1169 1 343 REM Transcription Factor Family AT4G33280 34.908 3.49e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele51g1169 B3 2.6e-15 CL0405