Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1126 ATGTCGGTTCTAATCGTCACCAGCTTAGGAGACATAGTGGTAGATTTGTACTCCGACAAATGCCCCTTGACGACTAAGAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGATGTCTATTTCACACCGTTCAGAAAGATTTCACTGCTCAGACTGGTGATCCAACTGGAATTGGAAGTGGCGGTGATTCGGTTTACAAATTTCTCTATGGTGATCAAGCTCGCTTTTTTAGTGATGAGATTCATATTGATTTAAAGCATTCTAAGACTGGTACAGTTGCCATGGCTAGTGCTGGAGAGAACCTGAATGCTTCCCAGTTCTACATCACTCTGCGAGATAATCTTGATTACCTTGATGGAAAGCACACTGTTTTTGGCGAGGTAGCTGAAGGACTTGACACTTTGACTAGAATAAATGAGGCTTACGTCGATGAGAGTGGGAGACCTTATAAAAATATCCGAATCAAACACACTTACATCTTAGATGACCCTTTTGACGATCCTCCTCAGCTAGCTGAGTTCATTCCTGACGCTTCACCAGAAGGAAAGCCAAAGAATGAGATTCTTGATGAAGTGCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATCCAGTAGAGCTTGAAGAGGTTATTAAGTCAAAGCAAGCACATTCTAGGGCTGTTGTCCTTGAGAGTATTGGAGATATTCCTGATGCTGAGATCAAGCCTCCTGACAATGTGCTATTTGTTTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACTATATTTTCACGCTTTGGGACTGTTGTGTCGGCTGAAATTATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAGCAGGCATGTGAACAAGCATATTTTAAGATGGACAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTCAGTCAAAGTGTGGCAAAACTATGGTCACAATATAGGCGCAAAGCTCAAACTGGTAATGGCTGCTTCAAATGTGGTTCTTCAGATCATATGGCCAAAGATTGCACTGAGGATGCTAAGCATAACCAAACGACAAAATACATCTTGAAGGAGGACAATGCCCAACGTGGTGGCGATGATGCAAGGTATGAAATGGTTTTTGATGGAGACGGTGAAGAGAGTCCGAGGCTAGGAAGGGGACACAGAAGGTATGACAAGGATGACCCAATTGAGAGAAAAAATATGAATAGAGGTCACAGGGATCAAGACAACAGAGATAGGTATGGTGATAGAAACAGAGGAGGAAGATATGAAAGAGGTGCAAGGGATGTGGATTCCCATGCAGACCGGAATGATAAGGATAAGTATATGGATAGACGTAGAGATGATGATGGTTATGGTCGGAAAGATGATCTAGACTCTAGGAAGAGATACGAGGATGATGGCCGTTCAGAGAGACGGACTGGTGCAGATTATAGGAGAAAAACGGATTCTAGCCGTGTGGAGAGAAGGGATGACAGGGACAAGGAGTATGGCAGAGATAGGGAGAAGAGAAAAAGGGATGGTTCAGCTGAAGATGGCCATAAAGACAGGAGGAGAATGGATAACAGAGATCATAGGACGAAACAAGAAGACAGAGGTAGGCAAGAGTCGAAGAATGAGTTCAGAGAAAGAAAAAGAAATCCAGATGATGATGAAGATTACAGACGTCAAGACTCGAAGAATGAGTCTAGAGAAAGAAAAAGAAATTCTGATGATGATGAAGATTACAAACGTCGAAGGGAAGAACGTGGGCAGAGAAGAAAAGATGTGGAGTTTGACGATGATCGACATAGCAGACATCGTAGTGACAGGAGATGA 1851 0.4252 MSVLIVTSLGDIVVDLYSDKCPLTTKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGIGSGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDNLDYLDGKHTVFGEVAEGLDTLTRINEAYVDESGRPYKNIRIKHTYILDDPFDDPPQLAEFIPDASPEGKPKNEILDEVRLEDDWVPMDEQLDPVELEEVIKSKQAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDHKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKAQTGNGCFKCGSSDHMAKDCTEDAKHNQTTKYILKEDNAQRGGDDARYEMVFDGDGEESPRLGRGHRRYDKDDPIERKNMNRGHRDQDNRDRYGDRNRGGRYERGARDVDSHADRNDKDKYMDRRRDDDGYGRKDDLDSRKRYEDDGRSERRTGADYRRKTDSSRVERRDDRDKEYGRDREKRKRDGSAEDGHKDRRRMDNRDHRTKQEDRGRQESKNEFRERKRNPDDDEDYRRQDSKNESRERKRNSDDDEDYKRRREERGQRRKDVEFDDDRHSRHRSDRR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1126 616 SMART rrm1_1 244 317 IPR000504 GO:0003723
Lele51g1126 616 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Lele51g1126 616 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
Lele51g1126 616 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Lele51g1126 616 Pfam Zinc knuckle 338 354 IPR001878 GO:0003676|GO:0008270
Lele51g1126 616 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Lele51g1126 616 SUPERFAMILY Cyclophilin-like 1 178 IPR029000 -
Lele51g1126 616 Gene3D - 331 414 - -
Lele51g1126 616 CDD cyclophilin_RRM 4 169 IPR035538 -
Lele51g1126 616 ProSiteProfiles Zinc finger CCHC-type profile. 339 354 IPR001878 GO:0003676|GO:0008270
Lele51g1126 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Lele51g1126 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Lele51g1126 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Lele51g1126 616 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Lele51g1126 616 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Lele51g1126 616 MobiDBLite consensus disorder prediction 382 616 - -
Lele51g1126 616 Gene3D - 199 325 IPR012677 -
Lele51g1126 616 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Lele51g1126 616 Gene3D - 1 172 IPR029000 -
Lele51g1126 616 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Lele51g1126 616 SUPERFAMILY RNA-binding domain, RBD 229 338 IPR035979 GO:0003676
Lele51g1126 616 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 513 IPR035542 -
Lele51g1126 616 CDD RRM_PPIL4 240 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1126 Lele-ChrLele51 7442345 7450308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1126 7 166 U-box Gene Family AT5G67530 40.000 4.16e-30 123