Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1125 ATGGACCAAAAAGTTCTTGTGGATGAAAACTTTCCACTCTTCTCCAAATCTCGTAAACCCTCAAAAAACCACTTGCCAGCTGCCCCAACTGCTACAGCCACCAATGGTGTTGCCACCAAAGACATTAACTTTGATAACCAACACCTTGGAAAGTCAGATGACACGGATCTTGATTTCACCAATCCTACTACTTTCGCGGAGCTAGGACTTGCCGAATGGGCTGTGAAGACTTGCAAGGAGCTCGCAATGCACAAGCCTTGGCAGGTCCAATTACATTGCATCCCGAAGATTCCAGATGGCTGCCATGTGCTTGGCATTGATGAGACAGGAAGTGGTAAGACTGCAGCATTTGCTCTACCAATTCTTCACCGGCTGGGGGAGCATCCTTTTGGGGGTTTTGCTTTGGTTTTGACGCCAACAAGGGAGTTGGCTTATCAACTAGCAGAGCAATTTAGGGCATTGGGTTCATGCTTGCATGTACGGATAGCTGTGGTGGTTGGAGGGATGGATATGTTGCAACAAGCCAAGACTTTAACATCCAGGCCTCATGTTGTGATTGCCACACCAGGAAGGATCAAGGTTTTGCTCGAGGATAATCCTGATATTCCTCCAGTTTTTTCTAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTTCTTGATGTCAGCTTTCAGGAGGATTTGAAATCGATCTTTCAGTGCTTACCAGAAAATCGGCAAAACCTATTTTTTTCTGCAACTACGACAATTAATCTACAGAAGCTGCGTGAGCGTTACCGAGACAAGCTCTATGTCTATGAAGCCTATCAAGGCCTGAAAACTGTTGAGACGCTTAAGCAACAAATTATATTTGTCCCCAACAAAGTGAAGGAGGTTTATTTAATGCATTTATTGTCCAAAATGGAAGATATGGGCATTCGATCTGCCATTGTTTTTTTCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTACTCGATCAAGAAGCTGCAGCTCTCTATTCGTTCAAATCACAGACTCAGAGACTTGAAGCACTTAATCAATTTAAATCAGGAAAGGTTTCTTTACTGCTTGCAACTGATGTTGCCAGCCGAGGTTTGGACATTCCTACTGTTGATCTAGTAATCAATTATGATGTCCCAAGGTTTCCGAGGGATTATGTCCATCGTGTTGGTCGAACTGCAAGAGCAGGTAGAGGAGGACTGGCAGTGAGCATTGTTACCCAGAATGTCATTCATCTCATTCATGAAGTAGAAGCTCTTCTTGAAAGGCAACTTGAGTTGGTGGAATACAAAGAGAATGAGGTGCTTTCTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCTGAAATGAAAATGTTGGATGATGGCTTTGAGGATAAAGCGAAAGAGCGGCAAAAGCAGAAACTGAAAATGTTGGCAGAAAAAGGATTGTTAAAGACAAGGAGCAAAAAGAGGAAAAGAAATAAAGGCGTCAAGGAAGAAGGGAAGAAAAATGAAGAGGAAGTGGAAACCTTTACCAGATAA 1542 0.4267 MDQKVLVDENFPLFSKSRKPSKNHLPAAPTATATNGVATKDINFDNQHLGKSDDTDLDFTNPTTFAELGLAEWAVKTCKELAMHKPWQVQLHCIPKIPDGCHVLGIDETGSGKTAAFALPILHRLGEHPFGGFALVLTPTRELAYQLAEQFRALGSCLHVRIAVVVGGMDMLQQAKTLTSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVSFQEDLKSIFQCLPENRQNLFFSATTTINLQKLRERYRDKLYVYEAYQGLKTVETLKQQIIFVPNKVKEVYLMHLLSKMEDMGIRSAIVFFSTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALNQFKSGKVSLLLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNVIHLIHEVEALLERQLELVEYKENEVLSLMKKVFSAKNVAEMKMLDDGFEDKAKERQKQKLKMLAEKGLLKTRSKKRKRNKGVKEEGKKNEEEVETFTR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1125 513 CDD DEADc_DDX49 65 268 - -
Lele51g1125 513 Gene3D - 54 266 IPR027417 -
Lele51g1125 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 441 IPR001650 -
Lele51g1125 513 SMART ultradead3 82 282 IPR014001 -
Lele51g1125 513 Gene3D - 267 441 IPR027417 -
Lele51g1125 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Lele51g1125 513 MobiDBLite consensus disorder prediction 482 513 - -
Lele51g1125 513 Pfam DEAD/DEAH box helicase 88 255 IPR011545 GO:0003676|GO:0005524
Lele51g1125 513 SMART helicmild6 321 402 IPR001650 -
Lele51g1125 513 Pfam Helicase conserved C-terminal domain 306 402 IPR001650 -
Lele51g1125 513 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 51 507 - -
Lele51g1125 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Lele51g1125 513 MobiDBLite consensus disorder prediction 498 513 - -
Lele51g1125 513 CDD SF2_C_DEAD 279 411 - -
Lele51g1125 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 414 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1125 Lele-ChrLele51 7435726 7441065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1125 64 414 Eukaryotic Initiation Factors Gene Family AT3G13920 32.682 2.52e-51 179