Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1115 ATGATGGTTATCCCGGGGCAACCCCAGATGATAGGTGGAGGTGCTCAGAAACTAACAACTAATGATGCCTTACTCTATCTCAAGGCTGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGACGACTTTCTGGAAGTAATGAAAAATTTCAAGGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTCAAAGGGCACAAGGATCTAATTTTGGGATTCAACACCTTCTTGCCAAAAGGATACGAAATCACGCTTCCACTGGAGGACGAACAGCCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATTAATTTTGTGAACAAAATTAAGGCTCGGTTTCAGGGTGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTATCATGAGGTCTGCTCATTCCTTGTGCTGTCTGTTGCCATTCTTTTCCAAGACCACCAAGACCTGCTTGTTGAGTTCACTCACTTTCTTCCAGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAACCTGCTCGGAACTCTTTGCTTCGGCACAGCAGCTCTGCAATGCCAGCAGTGCGGCATGTTGACAAGAGGGAAAGGACCATATCCTCACATGACCGTGACCATAGTGTTGATCATCCTGATCCAGATGACAGAGGTTTTATGAGGAGGCATGGTGAGAAGGAAAAGGACCGTAGGGAAGATAGAGACAGGAAAGAGCGGGAACGGGATGATAGAGATTATGAGCATGATAATAGTCGGGACTACAATATGCGGAATTTCCCCCACAAACCGAAACATGGTGGCAGGGGTGATGACTTTGGCGCTGAACCTCTGCATCAAGGAGGTGATGCTGATGAACATTTTGGTCTGCGCAGTATGTCATCGCCTTGTGATGATAAAAGTTCTGTGAAAAGAAAAGCAAAACTATGGGGTATATATAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGTAACCCTGATGATTATCAGGAATTTTTGAAGTGCCTGCATATCTATAGTAGGGAAATAATTACGCAACAAGAATTGCAATCATTGGTGGGTGATTTACTGGGAAAATATCCTGACCTTATGGAGGGGTTTAATGAATTTTTGGCAAGATGTGAGAAGAATGAATCCTTATGGAATGAAGGACATGCATCAAAATCAGTGAAGTCAGAAGACCAGGATAGAGATAGAGATCGTGGCCGGGATGATGAGGTTAAAGAAAGGGGTAGATCTGCTGCCATTACCAACAAGGATGTTTCAGGTTCTAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTAGCTTGGTGCTGACGTAGTGAATGATCATTGGGTGTCTGTGACATCTGGAAGTGAAGACTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTTGATATGCTGTTAGAGTCTGTGAATACGACAACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATAATCAAAGCAGAAAGTCCAATCCGAGTTGAGGAGCACCTAACAGCTTTAAATCTAAGGTGCATTGAACGGTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTAAGAAAGAATGCGCCTTTAGCTTTGCCAGTTATACTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGGAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACTAAAGGACTTAATTTACCTTCATCGGAGGGTGGTGATTCTACTAGACTAGGAACATCTACAAATGGGACCCTCTCTGAAGGCACCAAAGTTCAAAGATACCAAGAAGAATCAGTTGGACACTTAAAGGCTGAAAGAGAAGAAGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCGGTTTACAGAGATGCTGGTTTGGAGGCAATGAGTAAAGGAAAGGAGGGTGGTATGATTCATCAATACCAAAATAGACATGGAGAAGAAGAAGTTTGTGGTGAAGCCGGAGGGGAAAATGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCATGAAAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGGGCAGTTTCTGGTAGTGAGTCTGCTGATGGGGAGTGTTCTCGAGAAGAGCATGAAGATGGTGAGCACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCCGATGCCAATGATGTTGATGGAGACGGATCTCTATTGCCATTTTCAGAACGCTGTCTACTAACTGTAAAGCCTCTGGCAAAGTATGTTCCTGCAGCTTTGCATGAAAAAGAAGGGAATTCTCAGATTTTTTATGGAAACGACTCCTTTTATGTGCTTTTCAGACTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCTGAAAGAAAGTGGAAGGCTTCAAATGAAAAAAATTCTACTGATCAGTATGGCAGGTTCATGAATGCCCTTTATAGTTTACTGGATGGTTCTTCCGACAATACAAAATTTGAGGATGACTGCAGGGCTATTATTGGAACTCAATCTTATGTCTTATTCACTTTAGATAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTAGACAGAGTATATCATGAAAATGCCCGTGTTCTTCTTCACGATGAGAACATATATCGAATTGAATGTTCATCTACACCGTCCCGATTATCTATTCAACTGATGGACTATGGACATGACAAACCTGAATTGACTGCCGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATAGTGACTTCCTCTCTGTTGTTCCTGACAAAAAGGAAAAGTCAGTAATTTTCCTGAAGAGGAATAAACGCAGATACGCAAGTAGTGATGAATATTCAAGCCAGGCCTTGGAAGGAGTACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAGTTCATCCAAGGTTTCATATGTTTTAGATACTGAAGACTTTTTGTTTCGGATGAGAAGCAAAAGGAAAACTTTGCATCAGAACGGTTCATGCCATGAACAGGCAAAGTCTTCAAACATTTGTGCAAGCAGAGCACAGCGGTTTCGCAGATTGTTTCCCATTACATGA 3378 0.4115 MMVIPGQPQMIGGGAQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYHEVCSFLVLSVAILFQDHQDLLVEFTHFLPDASAAASAHYAQPARNSLLRHSSSAMPAVRHVDKRERTISSHDRDHSVDHPDPDDRGFMRRHGEKEKDRREDRDRKERERDDRDYEHDNSRDYNMRNFPHKPKHGGRGDDFGAEPLHQGGDADEHFGLRSMSSPCDDKSSVKRKAKLWGIYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITQQELQSLVGDLLGKYPDLMEGFNEFLARCEKNESLWNEGHASKSVKSEDQDRDRDRGRDDEVKERGRSAAITNKDVSGSRMSILSSKDKYMYKPINELDLSNXLGADVVNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNTTTKRVEELLEKINNNIIKAESPIRVEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKGLNLPSSEGGDSTRLGTSTNGTLSEGTKVQRYQEESVGHLKAEREEGELSPNGDFEEDNFAVYRDAGLEAMSKGKEGGMIHQYQNRHGEEEVCGEAGGENDVDADDEGEESHERSLEDSENASENGAVSGSESADGECSREEHEDGEHKAESEGEAEGMADANDVDGDGSLLPFSERCLLTVKPLAKYVPAALHEKEGNSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWKASNEKNSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENIYRIECSSTPSRLSIQLMDYGHDKPELTAVSMDPNFSAYLHSDFLSVVPDKKEKSVIFLKRNKRRYASSDEYSSQALEGVQVSNGLECKIACSSSKVSYVLDTEDFLFRMRSKRKTLHQNGSCHEQAKSSNICASRAQRFRRLFPIT 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1115 1125 Gene3D Paired amphipathic helix 328 396 IPR036600 GO:0006355
Lele51g1115 1125 Pfam Paired amphipathic helix repeat 347 391 IPR003822 GO:0006355
Lele51g1115 1125 Pfam Paired amphipathic helix repeat 39 83 IPR003822 GO:0006355
Lele51g1115 1125 Pfam Paired amphipathic helix repeat 125 177 IPR003822 GO:0006355
Lele51g1115 1125 MobiDBLite consensus disorder prediction 731 749 - -
Lele51g1115 1125 Gene3D Paired amphipathic helix 100 181 IPR036600 GO:0006355
Lele51g1115 1125 Pfam Sin3 family co-repressor 469 536 IPR013194 -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 196 313 - -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 405 435 - -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 711 804 - -
Lele51g1115 1125 Gene3D Paired amphipathic helix 22 84 IPR036600 GO:0006355
Lele51g1115 1125 MobiDBLite consensus disorder prediction 405 436 - -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 771 792 - -
Lele51g1115 1125 PANTHER SIN3B-RELATED 16 983 IPR039774 GO:0003714
Lele51g1115 1125 FunFam Paired amphipathic helix SIN3-like protein 101 180 - -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 716 730 - -
Lele51g1115 1125 Pfam C-terminal domain of Sin3a protein 839 1085 IPR031693 -
Lele51g1115 1125 Coils Coil 512 536 - -
Lele51g1115 1125 SMART hdac_interact2seq4b 454 543 IPR013194 -
Lele51g1115 1125 SUPERFAMILY PAH2 domain 98 179 IPR036600 GO:0006355
Lele51g1115 1125 FunFam Paired amphipathic helix protein Sin3 22 84 - -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 635 667 - -
Lele51g1115 1125 FunFam Paired amphipathic helix protein SIN3 326 396 - -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 635 692 - -
Lele51g1115 1125 ProSiteProfiles PAH domain profile. 102 180 IPR003822 GO:0006355
Lele51g1115 1125 ProSiteProfiles PAH domain profile. 16 86 IPR003822 GO:0006355
Lele51g1115 1125 SUPERFAMILY PAH2 domain 330 394 IPR036600 GO:0006355
Lele51g1115 1125 SUPERFAMILY PAH2 domain 16 85 IPR036600 GO:0006355
Lele51g1115 1125 MobiDBLite consensus disorder prediction 668 685 - -
Lele51g1115 1125 MobiDBLite consensus disorder prediction 205 302 - -
Lele51g1115 1125 ProSiteProfiles PAH domain profile. 321 394 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1115 Lele-ChrLele51 7323959 7332733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1115 3 121 WRKY Transcription Factor Family AT4G12020 48.760 1.21e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele51g1115 Sin3a_C 8.1e-60 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1115 51 7323959 7332733 Lele51g1115 51 7323959 7332733 ECH
Lele49g1098 49 7210387 7218949 Lele51g1115 51 7323959 7332733 hybridization
Lele50g1187 50 8155392 8165429 Lele51g1115 51 7323959 7332733 hybridization