LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele51g1093	ATGCCTTCTCATAGATCGAAATCGGAGAAGCATGATGCTGCGAAGCAGCCTCGTCGGGATCCCTATGAGGTTCTCGGCGTCTCACGCAACTCGACAGATCCAGAAATCAAAACATCATACCGAAAAATGGCGCTAAAATACCATCCTGACAAGAATGCTAACGATCCTGAAGCGGCTGATATGTTTAAAGAGGTCACCTTTTCATACAATATCTTGTCAGATCCTGACAAACGGCGTCAATATGACTCAGCTGGTTTTGAGGCCGTTGAATCAGATAGCCAAGAATTGGAATTGGATCTTTCAAGTTTAGGTGCCGTGAATACCATGTTTGCTGCACTTTTCAGTAAACTTGGTGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCACTTAATGGTGTGGTGACTATTCGTCCACTTCCCTTAGGGCATCCTATATCTAGAAGGGTTGAGAAGCAATCTGCTCACTTCTATTCAGTTACAATAACAGAAGAGGAAGCACGGGCTGGTTTTGTTTGTCGGGTGCAATCATTTGACAAGAGCAAGTTTAAGTTATTATATTTTGACCAAGAAGAGAATGATGGATTGAGTCTTGCACTCCAGGAAGATAGTGGAAAAACAGGAAAGGTTACCTCTGCTGGAATGTATTTTCTTGGTTTTCCTGTTTATCGGCTTGATCAAACAACAAACTCAATAGCTGCTGCCAAGGATCCTGATACATCATTTTTCAGAAAACTTGATGGTTTCCAACCATGTGAGCTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGTGACAATTTCTTCAAAAGTGCAAGCTATACGATAGAAGCTCTATGTGCTGCCCCTTTCAGTCAAGAAAAAGAGAGCCTCAGGAACATAGAAGCTCAAATCTTAACTAAACGAGCAGAACTATCTAAATTTGAGAGTGAATACCGAGAGGTTCTGTCACAATTTACAGAGATGACAAACAGATATGCGCAAGAAATGCAAATGATTGATGAACTATTGAAGCAAAGAAATGAGATACATGCCTCATATACTATTGCTCCATTAAAACGTATTACGAGTAAGAGTAGGAGTAAAAGTTCTTCCAAGGAGGCGACAGAAGAGAGCCAACCAAGAGAGAAGAGATTTACAAGAGGCCGATCGAAGAAGAAATGGTATAACATCCACTTGAGAGTTGACAAGAGAAAGGCTTGCTGA	1224	0.4118	MPSHRSKSEKHDAAKQPRRDPYEVLGVSRNSTDPEIKTSYRKMALKYHPDKNANDPEAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVTIRPLPLGHPISRRVEKQSAHFYSVTITEEEARAGFVCRVQSFDKSKFKLLYFDQEENDGLSLALQEDSGKTGKVTSAGMYFLGFPVYRLDQTTNSIAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTIEALCAAPFSQEKESLRNIEAQILTKRAELSKFESEYREVLSQFTEMTNRYAQEMQMIDELLKQRNEIHASYTIAPLKRITSKSRSKSSSKEATEESQPREKRFTRGRSKKKWYNIHLRVDKRKAC	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele51g1093	407	FunFam	Chaperone protein dnaJ 16	4	102	-	-
	Lele51g1093	407	ProSitePatterns	Nt-dnaJ domain signature.	62	81	IPR018253	-
	Lele51g1093	407	MobiDBLite	consensus disorder prediction	1	33	-	-
	Lele51g1093	407	SMART	dnaj_3	19	77	IPR001623	-
	Lele51g1093	407	Pfam	DnaJ domain	20	82	IPR001623	-
	Lele51g1093	407	MobiDBLite	consensus disorder prediction	366	384	-	-
	Lele51g1093	407	Coils	Coil	297	317	-	-
	Lele51g1093	407	Gene3D	DnaJ domain	4	103	IPR036869	-
	Lele51g1093	407	MobiDBLite	consensus disorder prediction	362	390	-	-
	Lele51g1093	407	MobiDBLite	consensus disorder prediction	1	19	-	-
	Lele51g1093	407	PRINTS	DnaJ domain signature	77	96	IPR001623	-
	Lele51g1093	407	PRINTS	DnaJ domain signature	22	40	IPR001623	-
	Lele51g1093	407	PRINTS	DnaJ domain signature	40	55	IPR001623	-
	Lele51g1093	407	PRINTS	DnaJ domain signature	57	77	IPR001623	-
	Lele51g1093	407	ProSiteProfiles	dnaJ domain profile.	20	85	IPR001623	-
	Lele51g1093	407	CDD	DnaJ	20	74	IPR001623	-
	Lele51g1093	407	SUPERFAMILY	Chaperone J-domain	17	89	IPR036869	-
	Lele51g1093	407	PANTHER	DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)	5	406	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele51g1093	Lele-ChrLele51	7119714	7123086	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele51g1093	13	83	C2H2 Transcription Factor Family	AT1G74250	42.105	6.44e-12	65.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele51g1093	51	7119714	7123086	Lele51g1093	51	7119714	7123086	ECH
	Lele49g1077	49	7021856	7025183	Lele51g1093	51	7119714	7123086	hybridization
	Lele50g1163	50	7922944	7926277	Lele51g1093	51	7119714	7123086	hybridization