Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1077 ATGGCTCCCGCTGCTACTCACCTTCCCTGCGATTGTGACGGTGCTTGTATGATCTGCAAGACGAAGCCTGCAGAGGAAGAAAAACTCATATGCAAAACCTGTGCTTCTCAATGGCATGTCAACTGTCTCTCTCACCATCCGGAGACGATGGCGGAGACGCTTCAGTGGGAATGCCCCGATTGTGCTACCCCACCCTCCGATTTCCCTTCGGCAACCGTTGGCAAAGCCTCCCTTGATGGGGCCGGTGACTTGATGGCGAAGATCCGAGCGATTGAGGCCGATAATTCTCTTACCGAACACGAGAAAGCGAAGAAACGGCAACAACTAATGAGTGGGAAGGCTGTGTTGGAGGAAGACGAATGCTGTGGGAAGAAGAAGGTAGTAAGTGACGGGAAGGACGTGTTGGATATTCTTAACGGGACTCTGAACTGTTCCTTCTGTATGCAGTTGCCCGAGAGGCCGGTCACGACGCCATGTGGCCACAATTTCTGTCTCAAGTGCTTTCAGAAATGGATTGCACAAGGGAGACTAACATGTGCCAAATGTCGTAGCGATATCCCTTCCAAAATGGCAAGTCAACCACGCATAAATTCTGCACTTGTTATCGCTATCCGTATGGCCAAAGTATCGAATAACATAGGTGCAGGACAAACCTCTAGAGTTTATCAGTATGTGCATAACCAGAACAAACCTGACAAGGCTTATACTACTGAGAGGGCCCAGAGGCAAGGGAAATCAAATGCATGCAGTGGAAAGATCTTTGTTACTGTCCCTCAGGACTATTTTGGTCCGATACCTGCGGAGAACGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGTGAATGTTGGGAAGATAGACTCGACTGCCGGCAATGGGGTGCTCACTTCCCTCATGTTAGTGGTATTGCTGGACAATCAAACCATGGTGCCCAATCAGTAGTTCTTTCTGGTGGTTATGTTGATGATGAGGATCACGGAGAGTATTTCCTTTATACTGGAAGTGGTGGTAGAGACTTGAGTGGAAACAAGCGAACAAGCAAAATACAATCATTTGATCAGAAGTTTGAAAAGTCCAATTTAGCTTTAAAAGTTAGCTGTTTAAAAGGTTATCCAGTTCGAGTTGTAAGATCTCATAAAGAGAAGCGTTCCTCATATGCCCCTGAGCAAGGATTACGTTATGATGGTGTTTATAGAATAGAAAAGTGTTGGCGGAAACAGGGATCGCAGGGCTTCAAAGTTTGTCGGTACTTATTTGTCAGATGTGACAATGAACCTGCCCCATGGACAAGTGATGATCACGGAGATCGTCCCCGACCATTGCCAGAAATTCCTGAGTTGGAAGAGGCTACAGACTTAGTTGTAAGGAAAGAGGATCCATCATGGGCATTTGATGAGGAAGGATCTTGTTGGAACTGGAAAAACCCACCACCTCCTAGTCGAAAGCATGTGAAAAATATGGACCCCCAAGAGGTAAAACGGTCAAGGAGGGAAATAAGGAAAGCTCAAAATCTTTCCATTAGGGAAAGATTGCTGAAAGGATTTGGTTGCCTTATCTGTAAAGAGGTTATGGTTACTCCTGTGACGACGCCCTGTGCTCATAATTTCTGTAAGTCATGTTTGGAAGGTGCATTTGCTGGCAAGTCTTTTGTGAGAGAAAGAAGCAGGGGTGGAAGATCTCTTCGGTCCCAAAAGAACGTGATGAAATGCCCATCTTGCCCTACTGACATCTCTGATTTTCTCCAGAACATTCAAGTCAATACAGAATTGTTGGGCTTAATTGAATCATTGAAAGCTGAGGCTGAAGAAGAAAATAGAGATGGAAGTGAGAATGAAGATGGAGCAGAGGAGGAAGAATGCGATGGTGCTGAGGCTACAATGGATGATGAAGATGAGGGCGGCGATGATGTTGAGGCTACAATGGATGAAGATAAGGATACTTCGGTCGAGAAGCTTAATGATTCAACTGAGGAATCTGATGATAGCAAACCACAGTCAAAAGAACTTGTAGTGACCAATAGTGGAGCCAAGGATACTTGCAAAAGAAAGAGAGCTGATGCTGAAAAAGTGTCTCCCAAAGCCAAAGGTGGTAAACGTAAAAATAAAAAGAAGGCTGAGGATGATGATGATGGAAATGATTCACCAGCAAGTCCTCTTCATTTGCCACCAGACAATTAA 2175 0.4543 MAPAATHLPCDCDGACMICKTKPAEEEKLICKTCASQWHVNCLSHHPETMAETLQWECPDCATPPSDFPSATVGKASLDGAGDLMAKIRAIEADNSLTEHEKAKKRQQLMSGKAVLEEDECCGKKKVVSDGKDVLDILNGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIAQGRLTCAKCRSDIPSKMASQPRINSALVIAIRMAKVSNNIGAGQTSRVYQYVHNQNKPDKAYTTERAQRQGKSNACSGKIFVTVPQDYFGPIPAENDPVRNQGVLVGECWEDRLDCRQWGAHFPHVSGIAGQSNHGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTSKIQSFDQKFEKSNLALKVSCLKGYPVRVVRSHKEKRSSYAPEQGLRYDGVYRIEKCWRKQGSQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPEIPELEEATDLVVRKEDPSWAFDEEGSCWNWKNPPPPSRKHVKNMDPQEVKRSRREIRKAQNLSIRERLLKGFGCLICKEVMVTPVTTPCAHNFCKSCLEGAFAGKSFVRERSRGGRSLRSQKNVMKCPSCPTDISDFLQNIQVNTELLGLIESLKAEAEEENRDGSENEDGAEEEECDGAEATMDDEDEGGDDVEATMDEDKDTSVEKLNDSTEESDDSKPQSKELVVTNSGAKDTCKRKRADAEKVSPKAKGGKRKNKKKAEDDDDGNDSPASPLHLPPDN 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1077 724 Pfam Zinc finger, C3HC4 type (RING finger) 144 182 IPR018957 GO:0046872
Lele51g1077 724 ProSiteProfiles Zinc finger PHD-type profile. 13 64 IPR019787 -
Lele51g1077 724 MobiDBLite consensus disorder prediction 599 724 - -
Lele51g1077 724 ProSitePatterns Zinc finger RING-type signature. 531 540 IPR017907 -
Lele51g1077 724 SUPERFAMILY PUA domain-like 246 443 IPR015947 -
Lele51g1077 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 623 IPR013083 -
Lele51g1077 724 SUPERFAMILY RING/U-box 510 598 - -
Lele51g1077 724 SUPERFAMILY FYVE/PHD zinc finger 8 65 IPR011011 -
Lele51g1077 724 ProSiteProfiles Zinc finger RING-type profile. 516 572 IPR001841 -
Lele51g1077 724 CDD RING-HC 144 182 - -
Lele51g1077 724 ProSiteProfiles Zinc finger RING-type profile. 144 183 IPR001841 -
Lele51g1077 724 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 243 438 - -
Lele51g1077 724 Pfam SAD/SRA domain 275 423 IPR003105 -
Lele51g1077 724 MobiDBLite consensus disorder prediction 643 664 - -
Lele51g1077 724 ProSiteProfiles YDG domain profile. 272 420 IPR003105 -
Lele51g1077 724 MobiDBLite consensus disorder prediction 605 642 - -
Lele51g1077 724 SUPERFAMILY RING/U-box 136 190 - -
Lele51g1077 724 Gene3D - 243 439 IPR036987 -
Lele51g1077 724 SMART ring_2 516 572 IPR001841 -
Lele51g1077 724 SMART ring_2 16 61 IPR001841 -
Lele51g1077 724 SMART ring_2 144 182 IPR001841 -
Lele51g1077 724 ProSitePatterns Zinc finger PHD-type signature. 10 61 IPR019786 -
Lele51g1077 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 63 IPR013083 -
Lele51g1077 724 Coils Coil 586 617 - -
Lele51g1077 724 SMART G9a_1 267 424 IPR003105 -
Lele51g1077 724 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 620 IPR045134 -
Lele51g1077 724 SMART PHD_3 15 62 IPR001965 -
Lele51g1077 724 MobiDBLite consensus disorder prediction 676 693 - -
Lele51g1077 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 209 IPR013083 -
Lele51g1077 724 FunFam Predicted protein 100 209 - -
Lele51g1077 724 Pfam RING-type zinc-finger 516 570 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1077 Lele-ChrLele51 6949442 6953759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1077 6 602 C2H2 Transcription Factor Family AT5G39550 60.862 0.0 731