Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1070 ATGATCCCAAAATCAAATGAGTCCGATCGCCGGATTCTGACCTTGCCGGCGGTTCATCCTTGGGGAGGTGTTTCTTTTCCCACACTTATCACTTCTTTATTCACCATTTCTCGTAGGATTTGCAGTTTCAAATCCAAAGTTTTCTCCAGTAACAAAAAAAATGCCAGAAAAGCCATTCGTATGATTGAGGTTCTTCAGATTTTTCTGGAAGAGATCCGAGACCAGCAGCAATCGAGTTTTCCGGATTCTGTAATCCTCAGCTTGTCGGAGCTCCATTTGACTTTCCAGAAGCTTCAGTTCCTCCTTGAAGACTTCACTCGTGAAGGCTCTCGGCTATACATTCTCATGGAGTCGGATCGGGTCGCGACGCATTTTCAGGTCCTTTCTAGATCCGTATTCACGGCTCTGGATATCTTCCCTTTCAGCTCCATAGAAATCTCAGAAGAAGTCAAAGAGCAGGTGGAATTGTTACTGAAGCAGGCACGAAAAGGCGATTTTGAACTTGAGCCAGAAGACAAACGAGCCATTAAGGATGTTTTATCCACTTTGAATCAATTTGACAACTCAATCACACCAATTGAGAGTGATCTCAGATGGATTCTTGATCATATTGGGGTTCGAAGATGGAGTGAGTGTAACAAAGAAATCAAGTTTCTGGATACAGAAATTGGATATGAGCGAATGAAGGAAGAGGAAAGAAAGCTGGCTTTTTTGAGTAGTTTAATGGCGTTCATGAGTTACTGCAGATGCGTGGTGATTGAGGTTGTTGATCATGGAGAAGATGACCCAAAACCTGATTACAGCAAAGAAAGTGATGAGATTCTTCAGACTCGGTGCTTCAACCCAGATGATTTTCGATGTCCAATCTCTCTAGAAATCATGAATGATCCAGTGACAATAGAGACGGGTCATACTTATGATCGATCTTCGATTCTTAAATGGTTCAGCAGTGGAAGCCTCATATGTCCCAAGACAGGGAGAAACCTTAGCAGCATCGAACTGGTCCCTAATTTGGTGCTTCGCAGGTTAATTCATCAATACTGTTCTAAAAACGGGATTCCCATGGCTGATCTGGGTCGGAGGAATAATCGTGATCGTGATAACAAAACTACTTGTCAGCCTGGAAGTTTGGCAGCTCAAGAAGCCATGAAAATGCTGGCAAGTTTTCTCAGTAACAAACTTCAAAACGAAGCAGAGGTTGAGAGAAACAGAGCTGCTTATGAGATTCGGGTTCTTGCCAAAAGAAACATCTTCAACAGGTCTTGTCTTGTGGAATCTGGTACAATACCTTATGTGTTATGGTTGTTGTCGTCATCGAGGAATCCAACAACACAAGAAAACGCCATAGCAGCTCTTCTGAACCTCTCAAAACACCCCAAAAGCAAAAGTATTATGGTTCTGAATGGGGGATTGCAATTGATTGTGAGTGTTTGTAAGAAAGGAATGAAGTTAGAATCTCGCCATCAGGCCGCTGCTACGTTGTTTTACCTGGCTTTGGATGAGGAGAACCGAAGATTGATCGGGGAAGAGCCGGGAGCGATCCCATCTTTGATCAATCTACTCAAAGATGGCTCTGATAGAGGCAAAAAGAATGGCTTGGTTGCTATATATGGGCTCCTTTTTCGCTCTGAGAATCACAAGAGCGTGCTTGAAGCTAAGGCAATTCCATTGCTACTTAGCATCTTAAGAACTTGTGAAAGAGAAGAATTAGTCACTGATTCATTAGCAGTACTGGCAAGTCTAGCTGAGACAAGTGCAGGAGCAATGGAAATCCTTGAAAATGGAGCTTTGAATCCAACCATTGAGATTTTGAATTCTTCTTCAACAACTTCAAGAGTTGGGAAGGAGCAATGTGTGTCTTTATTGCTTTCTCTAGCAGTAAATGGAGGAGCCAATGTGGTTGCTCTTCTAGTGAAAAATCCTTCTCTAATGGGATCCTTATATTCCTTACTCAGTGAAGGCACATCTAGAGGAAACAAAAAGGCCAGTGCTCTCATCAGGGTCCTCCATGATTTTTGTGAAAGGGGGCCCTATGGATTCAAGGCTTCAGTTCTTCCACAAGAACAATTCATTCCCGTTTGGTGA 2085 0.4283 MIPKSNESDRRILTLPAVHPWGGVSFPTLITSLFTISRRICSFKSKVFSSNKKNARKAIRMIEVLQIFLEEIRDQQQSSFPDSVILSLSELHLTFQKLQFLLEDFTREGSRLYILMESDRVATHFQVLSRSVFTALDIFPFSSIEISEEVKEQVELLLKQARKGDFELEPEDKRAIKDVLSTLNQFDNSITPIESDLRWILDHIGVRRWSECNKEIKFLDTEIGYERMKEEERKLAFLSSLMAFMSYCRCVVIEVVDHGEDDPKPDYSKESDEILQTRCFNPDDFRCPISLEIMNDPVTIETGHTYDRSSILKWFSSGSLICPKTGRNLSSIELVPNLVLRRLIHQYCSKNGIPMADLGRRNNRDRDNKTTCQPGSLAAQEAMKMLASFLSNKLQNEAEVERNRAAYEIRVLAKRNIFNRSCLVESGTIPYVLWLLSSSRNPTTQENAIAALLNLSKHPKSKSIMVLNGGLQLIVSVCKKGMKLESRHQAAATLFYLALDEENRRLIGEEPGAIPSLINLLKDGSDRGKKNGLVAIYGLLFRSENHKSVLEAKAIPLLLSILRTCEREELVTDSLAVLASLAETSAGAMEILENGALNPTIEILNSSSTTSRVGKEQCVSLLLSLAVNGGANVVALLVKNPSLMGSLYSLLSEGTSRGNKKASALIRVLHDFCERGPYGFKASVLPQEQFIPVW 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1070 694 SUPERFAMILY ARM repeat 387 669 IPR016024 -
Lele51g1070 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 427 470 IPR000225 GO:0005515
Lele51g1070 694 SMART arm_5 500 541 IPR000225 GO:0005515
Lele51g1070 694 SMART arm_5 415 457 IPR000225 GO:0005515
Lele51g1070 694 SMART arm_5 542 583 IPR000225 GO:0005515
Lele51g1070 694 SMART arm_5 458 499 IPR000225 GO:0005515
Lele51g1070 694 PANTHER U BOX DOMAIN-CONTAINING 50 669 - -
Lele51g1070 694 CDD RING-Ubox_PUB 285 326 IPR045210 -
Lele51g1070 694 FunFam RING-type E3 ubiquitin transferase 281 353 - -
Lele51g1070 694 Pfam Armadillo/beta-catenin-like repeat 419 456 IPR000225 GO:0005515
Lele51g1070 694 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Lele51g1070 694 Gene3D - 372 677 IPR011989 -
Lele51g1070 694 SUPERFAMILY RING/U-box 281 355 - -
Lele51g1070 694 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Lele51g1070 694 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Lele51g1070 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1070 Lele-ChrLele51 6905409 6907493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1070 1 694 U-box Gene Family AT1G10560 44.726 0.0 561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1070 51 6905409 6907493 Lele53g0954 53 19154958 19158988 CCT
Lele51g1070 51 6905409 6907493 Lele54g0934 54 15783285 15789403 CCT
Lele51g1070 51 6905409 6907493 Lele55g0519 55 3314740 3318743 CCT
Lele51g1070 51 6905409 6907493 Lele56g0505 56 3692020 3697252 CCT
Lele51g1070 51 6905409 6907493 Lele51g1070 51 6905409 6907493 ECH
Lele49g1058 49 6809220 6811304 Lele51g1070 51 6905409 6907493 hybridization
Lele50g1144 50 7640059 7641597 Lele51g1070 51 6905409 6907493 hybridization