Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1064 ATGGCGGATTCCGCCTCTTCTCCTGCCATCTCAGAGGCCAACCCGCAAAAAGCTGATTCGGTTGCTCCCAGTTCTCATCAGAACCAACCCGATCCGGTTCATCCCTCCGCACCCCCGGCAATACAACTTCCGCCATCATCCTCTGCGCCCGTCGGGGCAGTAAACCCTAACTCGAACCTATCAGTACTACCCCCGCCACCCCCGCCACCTCCTTCAATTTCATATGCGGCGGCGGGGGCTGCACCTCAAGTCTCTGGCGGAGCCGTTGCTCCTCCGGTTTTTCCATCCTTCAGGCCGGTAGCTCCGCAGACCCCCCAGTTTTCTCCCATACCTAACCCCATCAACTATCAAAATCCAGCGGTTCAGCCTCCCGGTGTAAGCTCTGCCTCCTCAATGACTCCTGGTGTGTCTAGTGCTGCCGGAGCGGTTCCAGTGCCAGGGCAGATGCAGCCAATGATGGTTCCTTATCATATTCCACCCGGTCAGCCTGCTAATCCGGCCTTGAGACCCTTTGCACAGATGCCCACTGGTTATACAGCCATTCCAGGAGCTCTGCCAGGAACCCTGCCTCCGCCGGGTGGGTTACATGTTGGAAGTCTCATGTTACATGCAATTGGTGGATGGGATGGTTTGAAGAGGCTGCAAGTAATCAAAGGTATGCCTCGGTATCCACCTCCTTATGGAACTATGGTTCGTCCTTCATTTCCTCCACGCCCACCTGGAGCTGTTAATGTGCTTCCAGTATCACGCCCTCCTGTTGCAGGGATCCCTCCTGTTCGCCCTGTGATTCCCCCTGTGGTTAGACCAGGGGTTGCTCCTAGTATTACACCATCTGATAAACCGCAAACTACAGTTTATATTGGAAAGATTGCATCAACAGTGGAAAATGAATTTATGCTTTCTCTACTTCAGTTGTGTGGACCTATCAAGAGTTGGAAACGTCCTCAAAATCCAACGAATGGAACTCCTTTAAGCTTTGGATTTTGGGAGTTTGAGTCTGCTGAAGGGGTTCTCCGTGCATTGCGTCTGCTCAATAAATTGAATATTGATGGGCAAGAATTAACGGTCAATCCTAATGACGCAACAAAAGAATATCTGGAGAAGTATGTTAAGAAGAAAAATGAGAACTTGCAAAAGGATACTCAGGCTGTCGGATCTGAGAAAGATGATGACAGTGCCCAACCTTCGAATGCAAGAGAGGATGGAAAGCCTGATGACTCAAAGAAAGAGGGCAGTAAGTCAGGGAACAAGGAAAATCACAATGTGACAAATCTCAGTATCATTACTGATGAAGACAGGGAAGCTGATAGAGAGGCCTCAGAGAAGATTACAAACATGATAGAGGAGAGACTGAAGACAAGACCTTTACCTCCACCTCCTGCACAAGCAGCTCCTGATGGCCCTGCAAACTCAGCTATGGAACAACCTTCAAAAGCAAGAGATGGAGACTCTGATGTAGATACAGCAAATAATGAAGCAGGTGATGATAAAAATGACAAGGAGACATATAGTGAGAACAAAGCAACCAGTGAACATGATAGGCCTGAGACCCCCGATAATAGAAGGCATGATAGGAGGAGCAGAGAAAGAGACCGAGATAGAGAACTAAAACGAGAAAAGGATAGGGAACTTGAAAGATATGAAAGAGAAGCAGAGCGAGAACGCATTAGGAAAGAGAGGGAACAAAGGAGGAGGATTGAGGAGGCTGTGCGCCAGTATGAAGCACGCTTGAAGGCTTGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGCCAATATGAGAAGGAGAAGGAGAAAGAACGGGAGCGCAAACGGAGAAAGGAGATACTTTATGATGAAGAGGATGAGGATGAGGATTCAAGGAAGAGGTGGCGCAGAAGTGTGTTAGATGAGAAACGAAAGAAAAGATTGCGGGAAAAGGAAGAGGACTTGGTTGACAGACAAAAGGAAGAGGAAGAAATTGCTGAGGCCAAAAGGAGGGCTGAGGAGGATCAACAACTGAAGCAGCAGAGAGATGCACTGAGGCTATTTTCTGAGCATGTGAATGGTTGTGAAAAAAGTATGGCTACTGAGGATGTGACTACTGAAGCCAAACACATTGTTACTGAACAAAACACTGTAGCTGACCGTGGTTATGAAGGCCATATAGGTGATGGTAATTCACTAAATGGCATCAATGATGAATCAACCATAGCATCGGTTGCTGTTTCTGATACACGACAGAGTGGCAATGCCCCTGCTAAGAAGTTGGGTTTTGGTTTGGTTGGTTCTGGGAAAAGAACTACTGTTCCTTCTGTCTTCCATGAGGAGGAGGAGGATGCACACAAGGATAAAAAGATGAGGCCTCTGGTTCCAATTGATTACTCAACTGAAGAACTGCAGGCTGTTCAACCTACTGTTTCTGGGGCCCCTCCCCCAAATTTGGCTGCAGCTGCAGAATTTGCTAAGCGTTTATCCAGTGCCAATATCAAGGAAGAGAAGGTGGATGGAGAGTGGGATAGAAGTAGGCGTTCTAGTGATAGGTCCAACTACCGAGGTAGGAAAAGGAATGATGAAGATGGCTCTCACAACAAAGATGAAAGCAGGGAAAAGATTTCTGATCGTGACAGGGATCGAGATCGTGGGTTGGAAAAACAGAAGACATCAGATAACAAAAAGCTATTAGATGCGAAACAGTTGATTGATATGATACCAAAGACCAAAGATGAGCTCTTCTCATATGAGATGAACTGGGCAGTGTATGACAAGGTTTTGATGATTTGGCACCAGCTGCATGAAAGAATGAGACCGTGGATATCGAAGAAGATCACAGAGTTCTTGGGGGAAGAAGAAACGACATTGGTAGATTACATAGTTTCAAGCACGCAGGAACATGTGAAAGCATCCCAGATGCTGGAGCTGCTTCAATCCATTTTAGATGAAGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAGGATAGAGACAGGCCTTGCTACGAGGTCAAAATCGTGA 3015 0.469 MADSASSPAISEANPQKADSVAPSSHQNQPDPVHPSAPPAIQLPPSSSAPVGAVNPNSNLSVLPPPPPPPPSISYAAAGAAPQVSGGAVAPPVFPSFRPVAPQTPQFSPIPNPINYQNPAVQPPGVSSASSMTPGVSSAAGAVPVPGQMQPMMVPYHIPPGQPANPALRPFAQMPTGYTAIPGALPGTLPPPGGLHVGSLMLHAIGGWDGLKRLQVIKGMPRYPPPYGTMVRPSFPPRPPGAVNVLPVSRPPVAGIPPVRPVIPPVVRPGVAPSITPSDKPQTTVYIGKIASTVENEFMLSLLQLCGPIKSWKRPQNPTNGTPLSFGFWEFESAEGVLRALRLLNKLNIDGQELTVNPNDATKEYLEKYVKKKNENLQKDTQAVGSEKDDDSAQPSNAREDGKPDDSKKEGSKSGNKENHNVTNLSIITDEDREADREASEKITNMIEERLKTRPLPPPPAQAAPDGPANSAMEQPSKARDGDSDVDTANNEAGDDKNDKETYSENKATSEHDRPETPDNRRHDRRSRERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEEAVRQYEARLKAWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVLDEKRKKRLREKEEDLVDRQKEEEEIAEAKRRAEEDQQLKQQRDALRLFSEHVNGCEKSMATEDVTTEAKHIVTEQNTVADRGYEGHIGDGNSLNGINDESTIASVAVSDTRQSGNAPAKKLGFGLVGSGKRTTVPSVFHEEEEDAHKDKKMRPLVPIDYSTEELQAVQPTVSGAPPPNLAAAAEFAKRLSSANIKEEKVDGEWDRSRRSSDRSNYRGRKRNDEDGSHNKDESREKISDRDRDRDRGLEKQKTSDNKKLLDAKQLIDMIPKTKDELFSYEMNWAVYDKVLMIWHQLHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLELLQSILDEEAEMFVLKMWRMLIFEIKRIETGLATRSKS 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1064 1004 MobiDBLite consensus disorder prediction 584 623 - -
Lele51g1064 1004 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Lele51g1064 1004 MobiDBLite consensus disorder prediction 376 416 - -
Lele51g1064 1004 Gene3D - 275 390 IPR012677 -
Lele51g1064 1004 SMART pwi_2 920 993 IPR002483 GO:0006397
Lele51g1064 1004 MobiDBLite consensus disorder prediction 376 568 - -
Lele51g1064 1004 FunFam RNA Binding Motif protein homolog 878 999 - -
Lele51g1064 1004 Pfam PWI domain 927 990 IPR002483 GO:0006397
Lele51g1064 1004 Gene3D PWI domain 878 1000 - -
Lele51g1064 1004 SMART rrm1_1 284 357 IPR000504 GO:0003723
Lele51g1064 1004 MobiDBLite consensus disorder prediction 1 68 - -
Lele51g1064 1004 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 1 1004 - -
Lele51g1064 1004 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Lele51g1064 1004 MobiDBLite consensus disorder prediction 427 449 - -
Lele51g1064 1004 Coils Coil 631 667 - -
Lele51g1064 1004 MobiDBLite consensus disorder prediction 704 725 - -
Lele51g1064 1004 SUPERFAMILY RNA-binding domain, RBD 257 361 IPR035979 GO:0003676
Lele51g1064 1004 Coils Coil 530 610 - -
Lele51g1064 1004 CDD RRM_RBM25 283 366 IPR034268 -
Lele51g1064 1004 MobiDBLite consensus disorder prediction 478 568 - -
Lele51g1064 1004 MobiDBLite consensus disorder prediction 825 882 - -
Lele51g1064 1004 MobiDBLite consensus disorder prediction 637 666 - -
Lele51g1064 1004 MobiDBLite consensus disorder prediction 739 763 - -
Lele51g1064 1004 SUPERFAMILY PWI domain 926 990 IPR036483 GO:0006397
Lele51g1064 1004 MobiDBLite consensus disorder prediction 1 31 - -
Lele51g1064 1004 ProSiteProfiles PWI domain profile. 902 1004 IPR002483 GO:0006397
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1064 Lele-ChrLele51 6856040 6863543 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1064 51 6856040 6863543 Lele51g1064 51 6856040 6863543 ECH
Lele49g1048 49 6742210 6747706 Lele51g1064 51 6856040 6863543 hybridization
Lele50g1137 50 7555646 7563439 Lele51g1064 51 6856040 6863543 hybridization