Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1044 ATGTTGGGGGGCAACAATGGAAATCCTGTTCCTCCTGTTTTCCTAGACGATGGTCACATGCAATATCAAACTAATGCGGCCAATCAACTTCAGTTGTTTGGAAACTTACCTGCTGGGTGTAGTGTTGATCCAGTTAATTACTTTGGAAATGAGCATATTAGTCCTATGGTTCGGCCAAGAAGACAAACTGGGGAAATAGATGACATGTCCAAGCAGCAAAGGCTTCAGATTTCCTTAAATTACAACTTCTGTCAAGATGAACCTGATCGATCAGCAAGTATTCCAAACCCAAACCCAAACCCAAACCCTGTGTCAACAGGATTGAGGTTGTCTTATGATGACGACGAGCGTAACTCATCTGTCACTTCTGCAAGTGGGAGCATGACTGGTGCGCCTTCAATCATATTATCCCTTGGTGACAATATTAGAACTGAGCTTGATAGGCAGAAGCAAGAATTGGATCAGTATATTAAACTTCAGAAGGAACTGTTGTCAAAAGGATTGAGAGACATGAAACAAAAGCACATGGCATCTCTTCTTACTGCCATTGACAAAGGCGTAAGCAGGAAGCTAAGGGAAAAAGATTTGGAGATAGAGAACATGAACCGTAAGAACCGAGAACTAGCTGAGAAAATAAAGCAGGTAGCCATGGAAGCACAAAACTGGCATTGCAGAGCAAAGTACAACGAGTCGGTTGTGAATGTTCTAAGGAACAATCTCCAGCAGGCTATCTCGCAGGGAGTTGAACAAGCGAAAGAAGGGTTTGGGGACAGTGAGGTTGATGATGCTGCCTCAGGCATTGACCCGAACAACTTGCTGAGCATCCATGGCATGCCAATGAAATCGACCACTGGAAAGAAGCCGCAAGGCTTGGAGGAGCACATGATTTGCAGGTCATGCAAGGCGAAGGAGGTTTCAATATTGTTAATGCCTTGTAGGCACCTGTGCTTGTGTATGGATTGTGATGCTTATGTCAATGTTTGTCCGGTATGCCAAATGATGAAATCTGCTAGTGTCCAAGTGTATCTTTCTTAA 1035 0.4386 MLGGNNGNPVPPVFLDDGHMQYQTNAANQLQLFGNLPAGCSVDPVNYFGNEHISPMVRPRRQTGEIDDMSKQQRLQISLNYNFCQDEPDRSASIPNPNPNPNPVSTGLRLSYDDDERNSSVTSASGSMTGAPSIILSLGDNIRTELDRQKQELDQYIKLQKELLSKGLRDMKQKHMASLLTAIDKGVSRKLREKDLEIENMNRKNRELAEKIKQVAMEAQNWHCRAKYNESVVNVLRNNLQQAISQGVEQAKEGFGDSEVDDAASGIDPNNLLSIHGMPMKSTTGKKPQGLEEHMICRSCKAKEVSILLMPCRHLCLCMDCDAYVNVCPVCQMMKSASVQVYLS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1044 344 MobiDBLite consensus disorder prediction 86 127 - -
Lele51g1044 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 344 IPR013083 -
Lele51g1044 344 PIRSF SBP1_RNase_bind 1 344 IPR017066 -
Lele51g1044 344 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 279 343 - -
Lele51g1044 344 ProSiteProfiles Zinc finger RING-type profile. 297 332 IPR001841 -
Lele51g1044 344 Coils Coil 146 166 - -
Lele51g1044 344 Coils Coil 191 218 - -
Lele51g1044 344 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 70 341 IPR017066 -
Lele51g1044 344 Pfam Zinc finger, C3HC4 type (RING finger) 295 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1044 Lele-ChrLele51 6687886 6689895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1044 293 342 C3H Transcription Factor Family AT1G73950 38.000 1.15e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g1044 51 6687886 6689895 Lele51g1044 51 6687886 6689895 ECH
Lele49g1025 49 6574739 6576718 Lele51g1044 51 6687886 6689895 hybridization
Lele50g1119 50 7348805 7350998 Lele51g1044 51 6687886 6689895 hybridization