Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g1004 ATGGATTTTGAGGAGCAAGAGGAGGAACTGGGGATGGGCCCCGAGGGGAGTTACGACTCCATGGGGAACCCGACCCGAGTGAAAATGGTGAGTGGCGGAGAAGTCATGGTGGTTCAGGCAGCAAGGAATAGTAACAATAAGGCGAGGTATAGGGAGTGCTTGAAGAACCACGCGGTGAGCATTGGCGGCCACGCGCTCGACGGTTGCGGCGAGTTTCTCCCAGCCGGAGCAGAAGGCACCATGGACGCTCTCAAATGTGCCGCCTGCAACTGCCACCGGAATTTCCACCGCAAAGAAACGGACACGATCTGTATCGGAGTCGGGGACCCGTATTTGTTAACCAACCATCCACACCTCCCCCAGCACCAACCGCCTCAGTTCTCGCCGTATTACCCGACAGCGCCGGCGGGGTATCTTCACGTGGGAGGACATCACAGAGGGCCGGCGACGCTGGCGCTTCCGTCGACATCAGGAGCAGGGTGCGGGATCCCGAGCATAAGGGACGATCACGAGGATTTTTCGAATCCGAGTGCAGGAGGAGGGCTGGACGGGTCGAAGAAAAGGTTCAGGACGAAGTTCACGCAGGAACAGAAAGACAAAATGCTGGCTTTGGCTGAGAAACTGGGTTGGAGGATTCAGAAGCACGACGAGGCGGTGGTCCAAGAGTTCTGTAACGAGACGGGTGTGAAGCGTCCCGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 750 0.5693 MDFEEQEEELGMGPEGSYDSMGNPTRVKMVSGGEVMVVQAARNSNNKARYRECLKNHAVSIGGHALDGCGEFLPAGAEGTMDALKCAACNCHRNFHRKETDTICIGVGDPYLLTNHPHLPQHQPPQFSPYYPTAPAGYLHVGGHHRGPATLALPSTSGAGCGIPSIRDDHEDFSNPSAGGGLDGSKKRFRTKFTQEQKDKMLALAEKLGWRIQKHDEAVVQEFCNETGVKRPVLKVWMHNNKHTLGKKP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g1004 249 Pfam ZF-HD protein dimerisation region 48 100 IPR006456 -
Lele51g1004 249 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Lele51g1004 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Lele51g1004 249 SUPERFAMILY Homeodomain-like 177 247 IPR009057 -
Lele51g1004 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 42 245 - -
Lele51g1004 249 MobiDBLite consensus disorder prediction 1 23 - -
Lele51g1004 249 FunFam Zinc-finger homeodomain protein 2 174 247 - -
Lele51g1004 249 Gene3D - 173 247 - -
Lele51g1004 249 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 186 242 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g1004 Lele-ChrLele51 6336665 6337414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g1004 1 245 ZF-HD Transcription Factor Family AT4G24660 49.597 9.42e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele51g1004 ZF-HD_dimer 1.1e-29 No_clan