Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele51g0972 ATGTCTTCATCTATCTCTAGCAACATAAAACAAGTAATTCAGAGAATCAGAGTTCTCGTCGACAAACAAGAAAGGGAAAAAAGAAGAGCTTTAAAAATTGATCTTCTTAAAGGTGAAATTTTTGTTTCCAACTTTGAATTTGTATATATGGGGGATAATTCCACTGAGTTTACAAAGAGTTTTAGTTTTGATATTTTGGTAAAAGATGAAGAAAATGGTTGCTCTGAAGGTTCCACTTCAATTAGAAGAGCTTTGCTAAAGAATAACCTCGTCACAAAAACGTCATCTTCTTCTTCTGCTGCTGCTGTTAAGCTGCATGAAATTCACAATAACCAGGTTGTGATAGATAATGGAATCGTCCGAGTCACGTTGTCCAGACCAGAAGGTTACGTCCTTGCAATATCTTATAATGGAATTGACAATGTCCTCGAAGCTCAAAACCAAAATCATAATCGAGGGTATCTTGACGTTGTTTGGAAAAATGTAGATTTTCAGAAGATCGAGGGGACGAAGTTCTCAGTTATAGAAATGACCGCAGATCAAGTGGAAGTTTCATTTTTACGAGAATGGTCATCTTCCATGAAAGGATCTGTGCCTATAAAAATAGACATGAGGTACGACGAAATTAATGAACTTAAACATCGTTTTAGGTATATAATGCGAAGAGGCGACTCGGGATATTACTCGTACGCGATATTTGAGAGGCCAGAAGGATTTCCAGCGGCGCAGGTTCATCAGATTAGGCTTGTTTATAAGCTCCGACAAGACAAGTTCCACTATATGGCGATATCAAGGAAGAGGCAAAGAGTAATGCCAACGGCTGAGGATAGAAGCAATGGACAGAAACTAGCTTATCCTGAAGCTGTTCTCTTGACCAGTGCCAAGAACCCCAGAATTAGAGGAGAGGTGGATGATAAATACCAGTACTCGGTGGAGAACAAAGACAACTGTGTTCATGGATGGATTAGCTTTGATGCTGAACCACACAGCGGATTCTGGGTTATTGCTCCCACTAATGAGTTTCGTAATGCTGGGCCCCACAAGCAGGATCTCACCTCTCATGTTGGCCCCACCTCCCTTGCTATGTTTGTGAGCACTCACTACGCTGGGACGAACGTGTCGATTGATTTTGAAGAAGGGGAGACATACAAGAAGGTGTTTGGCCCTATCTTTGTCTATCTTAACTCTGCTCCAAGCAACGCCAATTTAGATGCTCTCTGGTCAGATGCTGTTCGACAGTTCAATGAGGAAGTCAGAAGCTGGCCCTATGATTTCCCTCGATCTCCAGATTTCATTCTACCTAATCAACGAGGATCACTAAATGGACAATTACAAGTCCAAGATTGGTTCAACAAGGGATGGGGAATCTTAAACGCTAAGTTTGCTTATGTTGGTCTAGCTCTTCCTGGAGAAAATGGATCCTGGCAGAGAGAGAGCAAGGGTTATCAATTCTGGACTCAAGCTGATGAGAATGGCTACTTTGAAATCAAATACGTAATACCTGGGGATTATAATCTGTATGCCTGGGTTCCTGGCTTTATTGGTGATTACAGATATAATGTTACAATCACCATCAAACCAGGAGGTGTCGTTAAAATGGGTTCACTTGTATATAGTCCTCCAAGAAATGGTCCTACCATATGGGAGATTGGAGTCCCAGATCGCTCAGCCGGAGAGTTGTACATACCAGACCCTGAGCCTCAGCTCGTCAACAGATTGTACCAGAATGATACAAGAAACAAGTTTAGACAATATGGGTTGTGGGAACGTTACACTGACTTATATCCAGAGAAAGATCTAGTTTATAACGTTGGCGTCGATAAGCATCACGAGAATTGGTTTTTTGCTCATGTTGCCAGAAGGACAGGAAATCAGACATACCAACCAACAACATGGCAGATCAAATTTGAACTTGAAGATGATGACCCGTCGTCATCATCATCAGGAAACTACACTCTTCGAGTGGCCTTAGCATCAGCAAATGAAGCTAAGTTGCAGGTTTGGTTCAATGATGCGAGCGATGTTAATCCGCACTATGAGACAGCGAGGATGGGAGAAGACAATGCAATAGCGAGGCATGGCATTCATGGATTGTATAGTTTGATAAGTATCGAGGTAGCGAGTGGTCGACTTAAAAAGGGAAACAATATTATATATCTGAAGCAATCAGAAGCCTCAGACTCATTTCAAGGTGTTTTGTATGATTATCTCCGTTTAGAAAGACATCCAACTGCTACAAGGATGTGA 2247 0.4161 MSSSISSNIKQVIQRIRVLVDKQEREKRRALKIDLLKGEIFVSNFEFVYMGDNSTEFTKSFSFDILVKDEENGCSEGSTSIRRALLKNNLVTKTSSSSSAAAVKLHEIHNNQVVIDNGIVRVTLSRPEGYVLAISYNGIDNVLEAQNQNHNRGYLDVVWKNVDFQKIEGTKFSVIEMTADQVEVSFLREWSSSMKGSVPIKIDMRYDEINELKHRFRYIMRRGDSGYYSYAIFERPEGFPAAQVHQIRLVYKLRQDKFHYMAISRKRQRVMPTAEDRSNGQKLAYPEAVLLTSAKNPRIRGEVDDKYQYSVENKDNCVHGWISFDAEPHSGFWVIAPTNEFRNAGPHKQDLTSHVGPTSLAMFVSTHYAGTNVSIDFEEGETYKKVFGPIFVYLNSAPSNANLDALWSDAVRQFNEEVRSWPYDFPRSPDFILPNQRGSLNGQLQVQDWFNKGWGILNAKFAYVGLALPGENGSWQRESKGYQFWTQADENGYFEIKYVIPGDYNLYAWVPGFIGDYRYNVTITIKPGGVVKMGSLVYSPPRNGPTIWEIGVPDRSAGELYIPDPEPQLVNRLYQNDTRNKFRQYGLWERYTDLYPEKDLVYNVGVDKHHENWFFAHVARRTGNQTYQPTTWQIKFELEDDDPSSSSSGNYTLRVALASANEAKLQVWFNDASDVNPHYETARMGEDNAIARHGIHGLYSLISIEVASGRLKKGNNIIYLKQSEASDSFQGVLYDYLRLERHPTATRM 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele51g0972 748 CDD RGL4_C 548 740 - -
Lele51g0972 748 SUPERFAMILY Starch-binding domain-like 433 533 IPR013784 GO:0030246
Lele51g0972 748 Gene3D - 434 533 - -
Lele51g0972 748 Pfam Rhamnogalacturonate lyase family 92 303 IPR010325 -
Lele51g0972 748 Pfam Polysaccharide lyase family 4, domain III 546 739 IPR029411 -
Lele51g0972 748 Gene3D - 543 740 - -
Lele51g0972 748 SUPERFAMILY Galactose-binding domain-like 543 740 IPR008979 -
Lele51g0972 748 Gene3D - 106 412 IPR014718 GO:0030246
Lele51g0972 748 Pfam Polysaccharide lyase family 4, domain II 461 529 IPR029413 -
Lele51g0972 748 CDD RGL4_M 436 536 IPR029413 -
Lele51g0972 748 CDD RGL4_N 109 401 - -
Lele51g0972 748 FunFam Rhamnogalacturonate lyase B 434 533 - -
Lele51g0972 748 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 105 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele51g0972 Lele-ChrLele51 6137466 6145155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele51g0972 99 744 Polysaccharide Lyase AT1G09910 51.302 0.0 670
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0957 49 6028477 6035184 Lele51g0972 51 6137466 6145155 hybridization